YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|20197942, gi|...

General Information:
Name(s) found: gi|20197942 [NCBI NR]
gi|18404283 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|20197942|gb|AAD31580.2| putative farnesylated protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18404283|ref|NP_565855.1| heavy-metal-associated domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9SJL2) Putative farnesylated protein [athaliana3702.FASTAC.txt]
  • putative farnesylated protein [Arabidopsis thaliana]gi|18404283|ref|NP_565855.1| heavy-metal-associated domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Heavy-metal-associated domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | heavy-metal-associated domain-containing protein | chr2:15522295-15523833 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative farnesylated protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • metal ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Heavy metal transport/detoxification superfamily protein | chr2:15515216-15516754 FORWARD LENGTH=386 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Heavy-metal-associated domain-containing protein OS=Arabidopsis thaliana GN=At2g36950 PE=4 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 386 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: metal ion transport [IEA]
    Molecular Function: copper ion binding [IDA]
    metal ion binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEVQEGPKV EQEKKPAATV VPVETTDGKP KSGGGDSAAA AAPPVAAVVS AFVYKVDMHC  60
   61 EGCAKKIKRM VKHFDGVKDV TADTGGNKLL VVGKIDPVKL QEKLEEKTKR KVVLANPPPK 120
  121 VEGPVAAAVG EKKADGGDKE AAPPAPAPAA PKESVVPLKI RLHCEGCIQK IKKIILKIKG 180
  181 VETVAIDGAK DVVTVKGTID VKELVPLLTK KLKRTVEPLV PAKKDDGAAE NKKTEAAAPD 240
  241 AKKEAPSAGV NEAKKEGSDG GEKKKEVGDG GEKKKEGGDG GEKKKEAGDG GEKKKDGGGV 300
  301 PAPVAMVNKM DYYGYSAYPT APMHWQEGHV YGQSYSMTGQ NYPVGGQSYP GSGYNYASES 360
  361 YVPYAQPNVN APGMFSDENP NGCSVM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..243] PSI-BLAST 18.0 Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
    2 View Details [244..386] MSA 12.107996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.246147507070597 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle