YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: C3H54_ARATH

General Information:
Name(s) found: C3H54_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
SHOW ALL
  • Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 245 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: embryonic development ending in seed dormancy [IMP]
    Molecular Function: nucleic acid binding [ISS]
    transcription factor activity [ISS]
    zinc-mediated transcriptional activator activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSASPMAF YDIGEQQYST FGYILSKPGN AGAYEIDPSI PNIDDAIYGS DEFRMYAYKI  60
   61 KRCPRTRSHD WTECPYAHRG EKATRRDPRR YTYCAVACPA FRNGACHRGD SCEFAHGVFE 120
  121 YWLHPARYRT RACNAGNLCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR ARGGGNGDGV 180
  181 TMRMDDEGYD TSRSPVRSGK DDLDSNEEKV LLKCWSRMSI VDDHYEPSDL DLDLSHFDWI 240
  241 SELVD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] FFAS03 2.63 Solution Structure of the Zinc-finger domain in KIAA1064 protein
    2 View Details [133..155] PSI-BLAST 11.0 No description for 2d9nA was found.
    3 View Details [156..245] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle