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Protein Overview: gi|15223514, gi|...

General Information:
Name(s) found: gi|25404113 [NCBI NR]
gi|15223514 [NCBI NR]
gi|12321757 [NCBI NR]
Description(s) found:
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  • pir||H96604 probable 3'-5' exonuclease [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15223514|ref|NP_176027.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12321757|gb|AAG50917.1|AC069159_18 3'-5' exonuclease, putative [Arabidopsis thaliana] [NCBI NR]
  • (Q9C7K6) 3'-5' exonuclease, putative [athaliana3702.FASTAC.txt]
  • probable 3'-5' exonuclease [imported] - Arabidopsis thalianagi|12321757|gb|AAG50917.1| 3'-5' exonuclease, putative [Arabidopsis thaliana]gi|15223514|ref|NP_176027.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 3'-5' exonuclease domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 3'-5' exonuclease domain-containing protein | chr1:21086528-21088965 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 3'-5' exonuclease, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 582 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [IEA]
    Molecular Function: nucleic acid binding [IEA][ISS]
    3'-5' exonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLDSKEADL EVIRDEKSEA NTVCLHAFSD LTYVSPVVFL YLLKECYKHG SLKATKKFQA  60
   61 LQYQVHRVLA NKPQPGPATF IINCLTLLPL FGVYGEGFSH LVISALRRFF KTVSEPTSEE 120
  121 DICLARKLAA QFFLATVGGS LTYDEKVMVH TLRVFDVRLT SIDEALSISE VWQRYGFACG 180
  181 NAFLEQYISD LIKSKSFMTA VTLLEHFSFR FPGETFLQQM VEDKNFQAAE RWATFMGRPS 240
  241 LCILVQEYGS RNMLKQAYNI INKNYLQHDF PELYHKCKES ALKVLAEKAC WDVAEIKTKG 300
  301 DRQLLKYLVY LAVEAGYLEK VDELCDRYSL QGLPKAREAE VAFVEKSFLR LNDLAVEDVV 360
  361 WVDEVNELRK ATSFLEGCRV VGIDCEWKPN YIKGSKQNKV SIMQIGSDTK IFILDLIKLY 420
  421 NDASEILDNC LSHILQSKST LKLVSLTEDY PDHKLSSGYN FQCDIKQLAL SYGDLKCFER 480
  481 YDMLLDIQNV FNEPFGGLAG LTKKILGVSL NKTRRNSDWE QRPLSQNQLE YAALDAAVLI 540
  541 HIFRHVRDHP PHDSSSETTQ WKSHIVSTSY KSPYLSSDNS RR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..582] PSI-BLAST 68.221849 STRUCTURE OF TAQ DNA POLYMERASE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.722279828632226 bayes_pls_golite062009
  • hydrolase activity
    		•  0.29272620969648 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.24934115119652 bayes_pls_golite062009
  • nuclease activity
    		•  0.239989310123501 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.61

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle