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View Structure Prediction Details

Protein: gi|15223514, gi|...
Organism: Arabidopsis thaliana
Length: 582 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15223514, gi|....

Description E-value Query
Range
Subject
Range
gi|90437757, gi|... - gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14], gi|90437757|gb|EAS62948.1| DN...
469.0 [0..31] [580..1]

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Predicted Domain #1
Region A:
Residues: [1-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLDSKEADL EVIRDEKSEA NTVCLHAFSD LTYVSPVVFL YLLKECYKHG SLKATKKFQA  60
   61 LQYQVHRVLA NKPQPGPATF IINCLTLLPL FGVYGEGFSH LVISALRRFF KTVSEPTSEE 120
  121 DICLARKLAA QFFLATVGGS LTYDEKVMVH TLRVFDVRLT SIDEALSISE VWQRYGFACG 180
  181 NAFLEQYISD LIKSKSFMTA VTLLEHFSFR FPGETFLQQM VEDKNFQAAE RWATFMGRPS 240
  241 LCILVQEYGS RNMLKQAYNI INKNYLQHDF PELYHKCKES ALKVLAEKAC WDVAEIKTKG 300
  301 DRQLLKYLVY LAVEAGYLEK VDELCDRYSL QGLPKAREAE VAFVEKSFLR LNDLAVEDVV 360
  361 WVDEVNELRK ATSFLEGCRV VGIDCEWKPN YIKGSKQNKV SIMQIGSDTK IFILDLIKLY 420
  421 NDASEILDNC LSHILQSKST LKLVSLTEDY PDHKLSSGYN FQCDIKQLAL SYGDLKCFER 480
  481 YDMLLDIQNV FNEPFGGLAG LTKKILGVSL NKTRRNSDWE QRPLSQNQLE YAALDAAVLI 540
  541 HIFRHVRDHP PHDSSSETTQ WKSHIVSTSY KSPYLSSDNS RR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.221849
Match: 1taqA
Description: STRUCTURE OF TAQ DNA POLYMERASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.722279828632226 bayes_pls_golite062009
hydrolase activity 0.29272620969648 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.24934115119652 bayes_pls_golite062009
nuclease activity 0.239989310123501 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle