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Protein Overview: gi|15240503, gi|...

General Information:
Name(s) found: gi|15240503 [NCBI NR]
gi|10177619 [NCBI NR]
Description(s) found:
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  • gi|15240503|ref|NP_199764.1| SIN-like family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10177619|dbj|BAB10766.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FGZ3) Similarity to unknown protein [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15240503|ref|NP_199764.1| SIN-like family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 SIN-like family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | SIN-like family protein | chr5:20118160-20121468 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | SIN-like family protein | chr5:20100934-20104242 FORWARD LENGTH=689 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • SIN-like protein OS=Arabidopsis thaliana GN=At5g49530 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 689 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: transcription [IEA]
    Molecular Function: DNA-directed RNA polymerase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDDDDKPK EVTKTRRFAP GRAGKSKPKP KPEPTADKPV QPPPQSQTES VSKTEHDVDA  60
   61 KFVGTKVETE VCNGSVKMEI DSKVDKEPEI METELMEEDQ QLPLQEEKEE EEEEDDVVVR 120
  121 EIDVFFKPSI DANTQLYVLQ YPLRPSWRPY EMDERCEEVR VNPSTSQVEI DLSMDVHSKN 180
  181 YDSNFGLNMT KQTLKTTWKQ PPTLDYAVGV LSGDKLHLNP VHAVAQLRPS MQSLSSDKKK 240
  241 KQEESTEESV GTSKKQNKGV QQASTDQKPI NEETWVSLKY HGLQSEYCSR YLNGMMANGN 300
  301 SSIDFNMSPG TYINELCRGG SSRNSESKET LKRVLLSLPL KERVQKLLCE GSPLIRYSVL 360
  361 KHYAPEFSDE DFLGALQEYG RLVQGLWTPK TRLLKLDGPV EAARDYVLSL FSQNTTIKYS 420
  421 EVEATGDKMK PLMERMLTEF AKERHVLKDW KFKEPTDVSF IKSYPEIVKE QDIFWTDKRE 480
  481 NLKSRITAQG GKSRADKRRN VVGTSSSVTV KPEVPTTLSD KGGSSKNTIH RVVTQEMPEE 540
  541 LKKALPKALK KVFQTHKVCR YETICQGLRD LAVSTSNNPK ADSGMAVNVA LAVDAYQGEL 600
  601 EDVINGVATN IHGSYVSISS PDHPEYDSLR EVVISLLTGS PPGTKLMKAE VFAAGRTKLE 660
  661 REITNNEYIK VMHEICETNS SGWVLQKAR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] FFAS03 0.978 No description for 2grxC was found.
    2 View Details [200..315] deduced N/A No confident structure predictions are available.
    3 View Details [316..397] MSA 1.030985 View MSA. No confident structure predictions are available.
    4 View Details [398..514] deduced N/A No confident structure predictions are available.
    5 View Details [515..689] MSA 1.015979 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle