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View Structure Prediction Details

Protein: gi|15240503, gi|...
Organism: Arabidopsis thaliana
Length: 689 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240503, gi|....

Description E-value Query
Range
Subject
Range
gi|9858778 - gi|9858778|gb|AAG01125.1|AF273333_10 BAC19.10 [Lycopersicon esculentum]
696.0 [0..1] [681..1]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDDDDKPK EVTKTRRFAP GRAGKSKPKP KPEPTADKPV QPPPQSQTES VSKTEHDVDA  60
   61 KFVGTKVETE VCNGSVKMEI DSKVDKEPEI METELMEEDQ QLPLQEEKEE EEEEDDVVVR 120
  121 EIDVFFKPSI DANTQLYVLQ YPLRPSWRPY EMDERCEEVR VNPSTSQVEI DLSMDVHSKN 180
  181 YDSNFGLNMT KQTLKTTWK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.978
Match: 2grxC
Description: No description for 2grxC was found.

Predicted Domain #2
Region A:
Residues: [200-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPPTLDYAVG VLSGDKLHLN PVHAVAQLRP SMQSLSSDKK KKQEESTEES VGTSKKQNKG  60
   61 VQQASTDQKP INEETWVSLK YHGLQSEYCS RYLNGMMANG NSSIDFNMSP GTYINE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [316-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCRGGSSRNS ESKETLKRVL LSLPLKERVQ KLLCEGSPLI RYSVLKHYAP EFSDEDFLGA  60
   61 LQEYGRLVQG LWTPKTRLLK LD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [398-514]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPVEAARDYV LSLFSQNTTI KYSEVEATGD KMKPLMERML TEFAKERHVL KDWKFKEPTD  60
   61 VSFIKSYPEI VKEQDIFWTD KRENLKSRIT AQGGKSRADK RRNVVGTSSS VTVKPEV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [515-689]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTTLSDKGGS SKNTIHRVVT QEMPEELKKA LPKALKKVFQ THKVCRYETI CQGLRDLAVS  60
   61 TSNNPKADSG MAVNVALAVD AYQGELEDVI NGVATNIHGS YVSISSPDHP EYDSLREVVI 120
  121 SLLTGSPPGT KLMKAEVFAA GRTKLEREIT NNEYIKVMHE ICETNSSGWV LQKAR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle