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Protein Overview: gi|25289348, gi|...

General Information:
Name(s) found: gi|9954742 [NCBI NR]
gi|25289348 [NCBI NR]
gi|15223598 [NCBI NR]
Description(s) found:
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  • gi|9954742|gb|AAG09093.1|AC009323_4 Putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • pir||A96609 probable polygalacturonase F25P12.85 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15223598|ref|NP_176064.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9FXC1) Putative polygalacturonase [athaliana3702.FASTAC.txt]
  • glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]gi|25289348|pir||A96609 probable polygalacturonase F25P12.85 [imported] - Arabidopsis thalianagi|9954742|gb|AAG09093.1| Putative polygalacturonase [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr1:21261871-21263587 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Putative polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr1:21258206-21259922 REVERSE LENGTH=434 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Pectin lyase-like protein OS=Arabidopsis thaliana GN=F25P12.85 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 434 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPNSLFYT FFLILFSTIR IAQSIYLSPS PAPNPAYNDN DNIAPTVFDV TSFGAIGDCS  60
   61 TDDTSAFKMA WDAACMSTGP KSALLLVPYT FCFLVKPTTF NGPCRTNLVL QIDGFIVSPD 120
  121 GPRSWPSNYQ RQWMMFYRVN GLSIQGSGVI NGRGQKWWNL PCKPHKGLNG TTQTGPCDSP 180
  181 VAIRLFQSSK VRIQGINFMN SAQFHVRFDN CSDVVVDSVI IKAPASSPNT DGIHIENTHN 240
  241 VQIRNSMISN GDDCISIGAG CFNVDIKNVT CGPSHGISIG SLGVHNSQAY VSNITVTNST 300
  301 IWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTNNCA NQTSAVIISD 360
  361 VLYANIKGTY DLRSPPIHFG CSDSVPCTNL TLTEVDLFPS KGQHLENPFC WNAYGSMKIT 420
  421 VPPVYCLLDA PPDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..434] PSI-BLAST 43.09691 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle