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Protein Overview: SYP24_ARATH

General Information:
Name(s) found: SYP24_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75268180|sp|Q9C615.1|SYP24_ARATH RecName: Full=Putative syntaxin-24; Short=AtSYP24 [NCBI NR]
  • gi|15222626|ref|NP_174506.1| ATSYP24; SNAP receptor/ protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|12597869|gb|AAG60178.1|AC084110_11 syntaxin, putative [Arabidopsis thaliana] [NCBI NR]
  • Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1 [Swiss-Prot]
  • (Q9C615) Syntaxin, putative [athaliana3702.FASTAC.txt]
  • syntaxin, putative [Arabidopsis thaliana]gi|15222626|ref|NP_174506.1| syntaxin, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Syntaxin [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SYP24, ATSYP24 | ATSYP24 (syntaxin 24); protein binding | chr1:11642573-11644942 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • syntaxin, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATSYP24 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATSYP24, SYP24 | syntaxin, putative | chr1:11642593-11644962 FORWARD LENGTH=416 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 416 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [TAS]
    Biological Process: cellular membrane fusion [ISS]
    intra-Golgi vesicle-mediated transport [TAS]
    Molecular Function: protein binding [IEA]
    SNAP receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSNDVKFQ VYDAELTHFD LESNNNLQYS LSLNLSIRNS KSSIGIHYDR FEATVYYMNQ  60
   61 RLGAVPMPLF YLGSKNTMLL RALFEGQTLV LLKGNERKKF EDDQKTGVYR IDVKLSINFR 120
  121 VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR 180
  181 RDVAQSKKIA DAKLAKDFEA ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS 240
  241 QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG 300
  301 TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLLFSC SLLLFFFLSG DLCRCVCVGS 360
  361 ENPRLNPTRR KAWCEEEDEE QRKKQQKKKT MSEKRRREEK KVNKPNGFVF CVLGHK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] FFAS03 1.64 Solution structure of AT1g01470 from Arabidopsis Thaliana
    2 View Details [93..359] PSI-BLAST 40.69897 Syntaxin 1A N-terminal domain
    3 View Details [360..416] FFAS03 1.13 Intimin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.068037611730119 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle