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Protein Overview: Y5325_ARATH

General Information:
Name(s) found: Y5325_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 592 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: response to light stimulus [IEA][ISS]
    Molecular Function: protein binding [IEA]
    signal transducer activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFMRLGSKS EAFHREGQTW LCTTGLVSDV TIEVGDMKFH LHKFPLLSRS GLLERLIEES  60
   61 STDDGSGCVL SLDEIPGGGK TFELVTKFCY GVKIELTAFN VVSLRCAAEY LEMTDNYGEG 120
  121 NLVGMTETFL NEVFGNWTDS IKALQTCEEV IDYAEDLHII SRCVDSLAVK ACADPSLFNW 180
  181 PVGGGKNATS GQNTEDESHL WNGISASGKM LQHTGEDWWF DDASFLSLPL FKRLITAIEA 240
  241 RGMKLENIAM AVMYYTRKHV PLMNRQVNMD EQVIETPNPS EEDQKTCLEE IVGLLPSKKG 300
  301 VNPTKFLLRL LQTAMVLHAS QSSRENLERR IGNQLDQAAL VDLLIPNMGY SETLYDVECV 360
  361 LRMIEQFVSS TEQAGIVPSP CIIEEGHLVK DGADLLTPTT LVATLVDGYL AEVAPDVNLK 420
  421 LAKFEAIAAA IPDYARPLDD GVYHAIDVYL KAHPWITDSE REHICRLMNC QKLSLEASTH 480
  481 AAQNERLPLR VIVQVLFFEQ LRLRTSVSGW FFVSENLDNP DNQHGANGGL LKPRGENVRE 540
  541 RVSELEKECM NMKQELHKLV RTKRSWKNFT RKLNFKKKSE CCKPKDQATP AI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 20.39794 No description for 2nn2A was found.
    2 View Details [118..296] MSA 3.721993 View MSA. No confident structure predictions are available.
    3 View Details [297..452] MSA 2.117991 View MSA. No confident structure predictions are available.
    4 View Details [453..592] MSA 1.070978 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle