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View Structure Prediction Details

Protein: Y5325_ARATH
Organism: Arabidopsis thaliana
Length: 592 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y5325_ARATH.

Description E-value Query
Range
Subject
Range
gi|50940811, gi|... - gi|50940811|ref|XP_479933.1| putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protei...
606.0 [0..1] [587..1]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFMRLGSKS EAFHREGQTW LCTTGLVSDV TIEVGDMKFH LHKFPLLSRS GLLERLIEES  60
   61 STDDGSGCVL SLDEIPGGGK TFELVTKFCY GVKIELTAFN VVSLRCAAEY LEMTDNY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #2
Region A:
Residues: [118-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEGNLVGMTE TFLNEVFGNW TDSIKALQTC EEVIDYAEDL HIISRCVDSL AVKACADPSL  60
   61 FNWPVGGGKN ATSGQNTEDE SHLWNGISAS GKMLQHTGED WWFDDASFLS LPLFKRLITA 120
  121 IEARGMKLEN IAMAVMYYTR KHVPLMNRQV NMDEQVIETP NPSEEDQKTC LEEIVGLLP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [297-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKKGVNPTKF LLRLLQTAMV LHASQSSREN LERRIGNQLD QAALVDLLIP NMGYSETLYD  60
   61 VECVLRMIEQ FVSSTEQAGI VPSPCIIEEG HLVKDGADLL TPTTLVATLV DGYLAEVAPD 120
  121 VNLKLAKFEA IAAAIPDYAR PLDDGVYHAI DVYLKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [453-592]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPWITDSERE HICRLMNCQK LSLEASTHAA QNERLPLRVI VQVLFFEQLR LRTSVSGWFF  60
   61 VSENLDNPDN QHGANGGLLK PRGENVRERV SELEKECMNM KQELHKLVRT KRSWKNFTRK 120
  121 LNFKKKSECC KPKDQATPAI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle