YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PUB38_ARATH

General Information:
Name(s) found: PUB38_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|75262568|sp|Q9FJP6.1|PUB38_ARATH RecName: Full=U-box domain-containing protein 38; AltName: Full=Plant U-box protein 38 [NCBI NR]
  • gi|52421297|gb|AAU45218.1| At5g65200 [Arabidopsis thaliana] [NCBI NR]
  • gi|51536474|gb|AAU05475.1| At5g65200 [Arabidopsis thaliana] [NCBI NR]
  • gi|15238366|ref|NP_201323.1| PUB38 (PLANT U-BOX 38); ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|10178181|dbj|BAB11655.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38 PE=1 SV=1 [Swiss-Prot]
  • (Q9FJP6) Genomic DNA, chromosome 5, P1 clone:MQN23 [athaliana3702.FASTAC.txt]
  • At5g65200 [Arabidopsis thaliana]gi|51536474|gb|AAU05475.1| At5g65200 [Arabidopsis thaliana]gi|10178181|dbj|BAB11655.1| unnamed protein product [Arabidopsis thaliana]gi|15238366|ref|NP_201323.1| armadillo/beta-catenin repeat family protein / U-box domai [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Armadillo/beta-catenin repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | armadillo/beta-catenin repeat family protein / U-box domain-containing protein | chr5:26065399-26067069 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g65200 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PUB38, ATPUB38 | plant U-box 38 | chr5:26048173-26049843 REVERSE LENGTH=556 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 556 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IDA]
    Molecular Function: ubiquitin-protein ligase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER  60
   61 VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT WCDTVGVSRP QPPDYSTVER 120
  121 ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH 180
  181 SPFTPLPLTT RPACFSPSPS SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD 240
  241 QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK 300
  301 LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA 360
  361 ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR SGESASRALL VICNLACCSE 420
  421 GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA 480
  481 RAVEVLKEVE ERGTERAREK AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF 540
  541 RVGGRNRVVT QNSSGF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..72] PSI-BLAST 6.522879 No description for 2qizA was found.
    2 View Details [73..556] PSI-BLAST 34.154902 No description for 2gl7A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle