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Protein Overview: CKS1_ARATH

General Information:
Name(s) found: CKS1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|88010880|gb|ABD38867.1| At2g27960 [Arabidopsis thaliana] [NCBI NR]
  • gi|75097781|sp|O23249.1|CKS1_ARATH RecName: Full=Cyclin-dependent kinases regulatory subunit 1; AltName: Full=CKS1-At [NCBI NR]
  • gi|51970380|dbj|BAD43882.1| putative cyclin-dependent kinase regulatory subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|51969798|dbj|BAD43591.1| putative cyclin-dependent kinase regulatory subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|51969580|dbj|BAD43482.1| putative cyclin-dependent kinase regulatory subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|4510420|gb|AAD21506.1| putative cyclin-dependent kinase regulatory subunit [Arabidopsis thaliana] [NCBI NR]
  • pir||A84679 hypothetical protein At2g27960 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2274859|emb|CAA03859.1| Cks1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21593913|gb|AAM65878.1| putative cyclin-dependent kinase regulatory subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|15226294|ref|NP_180363.1| CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding [Arabidopsis thaliana] [NCBI NR]
  • Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE=1 SV=1 [Swiss-Prot]
  • (O23249) CKS1 protein (Putative cyclin-dependent kinase regulatory subunit) [athaliana3702.FASTAC.txt]
  • putative cyclin-dependent kinase regulatory subunit [Arabidopsis thaliana]gi|2274859|emb|CAA03859.1| Cks1 protein [Arabidopsis thaliana]gi|4510420|gb|AAD21506.1| putative cyclin-dependent kinase regulatory subunit [Arabidopsis thaliana]gi|51970380|dbj| [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cyclin-dependent kinase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CKS1, CKS1AT | CKS1/CKS1AT (CDK-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding | chr2:11917980-11918620 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At2g27960 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative cyclin-dependent kinase regulatory subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Cks1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CKS1; cyclin-dependent protein kinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CKS1, CKS1AT | cyclin-dependent kinase-subunit 1 | chr2:11910903-11911543 REVERSE LENGTH=87 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 87 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    Biological Process: DNA endoreduplication [IDA][IMP]
    regulation of cell cycle [IMP]
    mitotic cell cycle [IDA]
    Molecular Function: protein binding [IPI]
    cyclin-dependent protein kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQIQYSEKY FDDTFEYRHV VLPPEVAKLL PKNRLLSENE WRAIGVQQSR GWVHYAVHRP  60
   61 EPHIMLFRRP LNYQQQQENQ AQNMLVK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] PSI-BLAST 31.0 CksHs1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cyclin-dependent protein kinase regulator activity
    		•  3.97841828100668 bayes_pls_golite062009
  • binding
    		•  2.18113207610794 bayes_pls_golite062009
  • protein binding
    		•  1.97943309243131 bayes_pls_golite062009
  • protein kinase regulator activity
    		•  1.37860707665544 bayes_pls_golite062009
  • kinase regulator activity
    		•  1.32978090173102 bayes_pls_golite062009
  • protein kinase binding
    		•  0.944579171364175 bayes_pls_golite062009
  • kinase binding
    		•  0.867010292327918 bayes_pls_golite062009
  • ubiquitin binding
    		•  0.417755994450789 bayes_pls_golite062009
  • enzyme binding
    		•  0.349317458622834 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.334428481657021 bayes_pls_golite062009
  • small conjugating protein binding
    		•  0.32298430897304 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle