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Protein Overview: gi|7268369, gi|1...

General Information:
Name(s) found: gi|7485130 [NCBI NR]
gi|7268369 [NCBI NR]
gi|2244978 [NCBI NR]
gi|15234851 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • pir||E71428 hypothetical protein - Arabidopsis thaliana [NCBI NR]
  • gi|7268369|emb|CAB78662.1| splicing factor SF3a like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|2244978|emb|CAB10399.1| splicing factor SF3a like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15234851|ref|NP_193355.1| SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 288 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSTLQSEQ SMEIITPPAD IGTRTLVDKA AQFVSKKGLE FETKIIDSYP TDAKFNFLRS  60
   61 TADPCHTYYK HKLAEYSSQN QDGATDESDI KIFHAPPNVT TTAIVETTSC LVSQFGSEFE 120
  121 MMVKDSNTDD ARFNFLKSSE DPYNVLYKQK LDEYSLDPRD AYYQHKLAES ISKYHREATP 180
  181 KLVLPNLLQF RLVKEMTFEE LDTVKVTAQF VAWYGDDFRG FLMERVMTEP QFEFMKATDY 240
  241 RFSFYNEFVV AYSQVLNPPK YLKDKLRGRA AYTVIGHLLI TMSEEEIS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] PSI-BLAST 18.221849 No description for 2dt6A was found.
    2 View Details [84..175] PSI-BLAST 14.09691 Solution structure of SURP domain in splicing factor 4
    3 View Details [176..288] PSI-BLAST 26.522879 No description for 2dt7B was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle