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Protein Overview: PPR21_ARATH

General Information:
Name(s) found: PPR21_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 741 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: chloroplast RNA processing [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLSCSPLTV PSSSYPFHFL PSSSDPPYDS IRNHPSLSLL HNCKTLQSLR IIHAQMIKIG  60
   61 LHNTNYALSK LIEFCILSPH FEGLPYAISV FKTIQEPNLL IWNTMFRGHA LSSDPVSALK 120
  121 LYVCMISLGL LPNSYTFPFV LKSCAKSKAF KEGQQIHGHV LKLGCDLDLY VHTSLISMYV 180
  181 QNGRLEDAHK VFDKSPHRDV VSYTALIKGY ASRGYIENAQ KLFDEIPVKD VVSWNAMISG 240
  241 YAETGNYKEA LELFKDMMKT NVRPDESTMV TVVSACAQSG SIELGRQVHL WIDDHGFGSN 300
  301 LKIVNALIDL YSKCGELETA CGLFERLPYK DVISWNTLIG GYTHMNLYKE ALLLFQEMLR 360
  361 SGETPNDVTM LSILPACAHL GAIDIGRWIH VYIDKRLKGV TNASSLRTSL IDMYAKCGDI 420
  421 EAAHQVFNSI LHKSLSSWNA MIFGFAMHGR ADASFDLFSR MRKIGIQPDD ITFVGLLSAC 480
  481 SHSGMLDLGR HIFRTMTQDY KMTPKLEHYG CMIDLLGHSG LFKEAEEMIN MMEMEPDGVI 540
  541 WCSLLKACKM HGNVELGESF AENLIKIEPE NPGSYVLLSN IYASAGRWNE VAKTRALLND 600
  601 KGMKKVPGCS SIEIDSVVHE FIIGDKFHPR NREIYGMLEE MEVLLEKAGF VPDTSEVLQE 660
  661 MEEEWKEGAL RHHSEKLAIA FGLISTKPGT KLTIVKNLRV CRNCHEATKL ISKIYKREII 720
  721 ARDRTRFHHF RDGVCSCNDY W

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..741] PSI-BLAST 28.30103 Clathrin D6 Coat


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle