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Protein Overview: gi|9759354, gi|1...

General Information:
Name(s) found: gi|9759354 [NCBI NR]
gi|15242319 [NCBI NR]
gi|110741584 [NCBI NR]
Description(s) found:
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  • gi|9759354|dbj|BAB10009.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15242319|ref|NP_196477.1| U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110741584|dbj|BAE98740.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9FNM8) Genomic DNA, chromosome 5, P1 clone:MAH20 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15242319|ref|NP_196477.1| U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U3 ribonucleoprotein (Utp) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | U3 ribonucleoprotein (Utp) family protein | chr5:2786299-2789737 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | U3 ribonucleoprotein (Utp) family protein | chr5:2786298-2789736 FORWARD LENGTH=822 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At5g08600 OS=Arabidopsis thaliana GN=At5g08600 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4KB50, Putative uncharacterized protein At5g08600 OS=Arabidopsis thaliana GN=At5g08600 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 822 amino acids

    Gene Ontology:
    Cellular Component: small-subunit processome [IEA]
    Biological Process: rRNA processing [IEA][ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGEKRKSS FKNLANAKKR RTGPHLPSSI LKTIANEKRP LNSDEGDDEI DSAYGDFYEY  60
   61 EEGVPEEESR KNNRYERVVN YEFELAEDCE DENVESEDDD DDDDDDDDDR HSRMLKNVTE 120
  121 LPISAFQGES KNKRVVFTEP YPESEFNPTR DVLEGKSLTT IDDFMEPLQG LHGNSQLSNM 180
  181 ISRMRKDTQS LVHAPLPKPE QERLERDVAN ELVYKGFDIW VPLVKRNREA PTIYFNQDVN 240
  241 VGYSTVGAIA SQFHPRTEFE MKMASLLDDH EILEAHKEDG ARLLEFNEVS MEDHIKRRNH 300
  301 VAKMRSMLFR VDLKHKRIKQ IKSKTYHRLK NKDLNQSGVG AFMEPAMAKE EAKKQEARRV 360
  361 KERMTLKHKN TGQWAKRMLS RGLNRKYDVT QAALSKQLQI HATLSRKMNS TKDESSSDEE 420
  421 DLNDGSDQDT SKLIAEAKEK ILKTVDDDEV PISRLMSLPF MARAVKKKNE EAKEEGKRDI 480
  481 EELEKFGGAE TSKKSTNVVG RRVFGAEAPK ESEKESDNLF DNSDSSDNDM EDNELEAVKD 540
  541 NASPARNTET IMEAEKLDDI AGNPASKTTF DVALYASGSW KKMTGCKNAE SKKASKTHVP 600
  601 ISQSQDKKES SDSESDDSES DDSESEAEQM VDGILTCGSK ETYEIPCQAE LVSRAFAGDD 660
  661 VEGDFEKDKQ EVLNQEVPEP EKPVQVAGWG HWTNNQNKRG LPSRIVREHE EAKKTREQAL 720
  721 RKRKDASFKH VIISEKVDKK AEKLQTKSLP YPYTSKEVFE QSMRMPIGPE FNPTTIVGVL 780
  781 NRPEVVKKAG VIIKPVKFEE VNPNDEHPRS HQKQKPKKKG GK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..306] PSI-BLAST 22.0 Heavy meromyosin subfragment
    2 View Details [307..599] PSI-BLAST 5.09691 Tropomyosin
    3 View Details [600..822] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle