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Protein Overview: SYCP1_ARATH

General Information:
Name(s) found: SYCP1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9392688|gb|AAF87265.1|AC068562_12 T16E15.12 [Arabidopsis thaliana] [NCBI NR]
  • gi|79349253|ref|NP_173645.3| ZYP1a [Arabidopsis thaliana] [NCBI NR]
  • gi|66394506|gb|AAY46119.1| synaptonemal complex central region protein ZYP1a [Arabidopsis thaliana] [NCBI NR]
  • gi|47606316|sp|Q9LME2.1|SYCP1_ARATH RecName: Full=Synaptonemal complex protein 1; AltName: Full=Synaptonemal complex central region protein ZYP1a [NCBI NR]
  • pir||D86355 protein T16E15.12 [imported] - Arabidopsis thaliana [NCBI NR]
  • (Q9LME2) Hypothetical protein At1g22260 [Swiss-Prot]
  • Synaptonemal complex protein 1 OS=Arabidopsis thaliana GN=ZYP1A PE=2 SV=1 [Swiss-Prot]
  • (Q9LME2) T16E15.12 [athaliana3702.FASTAC.txt]
  • Hypothetical protein At1g22260gi|25402962|pir||D86355 protein T16E15.12 [imported] - Arabidopsis thalianagi|9392688|gb|AAF87265.1| T16E15.12 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Hypothetical protein At1g22260 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ZYP1, ZYP1a | ZYP1a | chr1:7860149-7865131 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • synaptonemal complex central region protein ZYP1a [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • T16E15.12 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Synaptonemal complex protein 1 (Synaptonemal complex central region protein ZYP1a) [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ZYP1a, ZYP1 | Myosin heavy chain-related protein | chr1:7860160-7865142 REVERSE LENGTH=871 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 871 amino acids

    Gene Ontology:
    Cellular Component: synaptonemal complex [IDA]
    Biological Process: reciprocal meiotic recombination [IMP]
    synapsis [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLGFPAMK SLDKPRSLSG SANMYSFSNR KPPDSVSSGS FSNLKLTAEK LVKDQAAMRT  60
   61 DLELANCKLK KSMEHVYALE EKLQNAFNEN AKLRVRKKED EKLWRGLESK FSSTKTLCDQ 120
  121 LTETLQHLAS QVQDAEKDKG FFETKFSTSS EAIDSLNQQM RDMSLRLDAA KEEITSRDKE 180
  181 LEELKLEKQQ KEMFYQTERC GTASLIEKKD AVITKLEASA AERKLNIENL NSQLEKVHLE 240
  241 LTTKEDEVKD LVSIQEKLEK EKTSVQLSAD NCFEKLVSSE QEVKKLDELV QYLVAELTEL 300
  301 DKKNLTFKEK FDKLSGLYDT HIMLLQKDRD LALDRAQRSF DNLQGELFRV AATKEALESA 360
  361 GNELNEKIVE LQNDKESLIS QLSGLRCSTS QTIDKLESEA KGLVSKHADA ESAISQLKEE 420
  421 METLLESVKT SEDKKQELSL KLSSLEMESK EKCEKLQADA QRQVEELETL QKESESHQLQ 480
  481 ADLLAKEVNQ LQTVIEEKGH VILQCNENEK QLNQQIIKDK ELLATAETKL AEAKKQYDLM 540
  541 LESKQLELSR HLKELSQRND QAINEIRRKY DVEKHEIINS EKDKVEKIIK DLSNKFDKEL 600
  601 SDCKEESKRQ LLTIQEEHSS LILSLREEHE SKELNLKAKY DQELRQSQIQ AENELKERIT 660
  661 ALKSEHDAQL KAFKCQYEDD CKKLQEELDL QRKKEERQRA LVQLQWKVMS DNPPEEQEVN 720
  721 SNKNYSISKD SRLGGSKRSE HIRVRSDNDN VQDSPFVKAK ETPVSKILKK AQNVNAGSVL 780
  781 SIPNPKHHSK VTHREYEVET NNGRVTKRRK TRNTTMFEEP QRRRTRATPK LTPQSIAKGT 840
  841 GMTSHARSAN IGDLFSEGSL NPYADDPYAF D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..321] PSI-BLAST 22.221849 Heavy meromyosin subfragment
    2 View Details [322..529] PSI-BLAST 3.30103 No description for 2v71A was found.
    3 View Details [530..763] deduced N/A No confident structure predictions are available.
    4 View Details [764..871] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle