| Protein: | SYCP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 871 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYCP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
386.0 | [0..4] | [867..2003] |
|
|
368.0 | [0..4] | [868..1001] |
|
|
367.0 | [0..4] | [868..1005] |
|
|
366.0 | [0..4] | [868..1003] |
|
|
366.0 | [0..4] | [868..1001] |
|
|
366.0 | [0..4] | [868..1003] |
|
|
366.0 | [0..4] | [869..439] |
|
|
365.0 | [0..4] | [868..996] |
|
Region A: Residues: [1-321] |
1 11 21 31 41 51
| | | | | |
1 MQKLGFPAMK SLDKPRSLSG SANMYSFSNR KPPDSVSSGS FSNLKLTAEK LVKDQAAMRT 60
61 DLELANCKLK KSMEHVYALE EKLQNAFNEN AKLRVRKKED EKLWRGLESK FSSTKTLCDQ 120
121 LTETLQHLAS QVQDAEKDKG FFETKFSTSS EAIDSLNQQM RDMSLRLDAA KEEITSRDKE 180
181 LEELKLEKQQ KEMFYQTERC GTASLIEKKD AVITKLEASA AERKLNIENL NSQLEKVHLE 240
241 LTTKEDEVKD LVSIQEKLEK EKTSVQLSAD NCFEKLVSSE QEVKKLDELV QYLVAELTEL 300
301 DKKNLTFKEK FDKLSGLYDT H
|
| Detection Method: |  |
| Confidence: | 22.221849 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [322-529] |
1 11 21 31 41 51
| | | | | |
1 IMLLQKDRDL ALDRAQRSFD NLQGELFRVA ATKEALESAG NELNEKIVEL QNDKESLISQ 60
61 LSGLRCSTSQ TIDKLESEAK GLVSKHADAE SAISQLKEEM ETLLESVKTS EDKKQELSLK 120
121 LSSLEMESKE KCEKLQADAQ RQVEELETLQ KESESHQLQA DLLAKEVNQL QTVIEEKGHV 180
181 ILQCNENEKQ LNQQIIKDKE LLATAETK
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 2v71A |
| Description: | No description for 2v71A was found. |
|
Region A: Residues: [530-763] |
1 11 21 31 41 51
| | | | | |
1 LAEAKKQYDL MLESKQLELS RHLKELSQRN DQAINEIRRK YDVEKHEIIN SEKDKVEKII 60
61 KDLSNKFDKE LSDCKEESKR QLLTIQEEHS SLILSLREEH ESKELNLKAK YDQELRQSQI 120
121 QAENELKERI TALKSEHDAQ LKAFKCQYED DCKKLQEELD LQRKKEERQR ALVQLQWKVM 180
181 SDNPPEEQEV NSNKNYSISK DSRLGGSKRS EHIRVRSDND NVQDSPFVKA KETP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [764-871] |
1 11 21 31 41 51
| | | | | |
1 VSKILKKAQN VNAGSVLSIP NPKHHSKVTH REYEVETNNG RVTKRRKTRN TTMFEEPQRR 60
61 RTRATPKLTP QSIAKGTGMT SHARSANIGD LFSEGSLNPY ADDPYAFD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
