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Protein Overview: gi|209529799, gi...

General Information:
Name(s) found: gi|7487155 [NCBI NR]
gi|3395431 [NCBI NR]
gi|209529799 [NCBI NR]
gi|15224501 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • pir||T02504 hypothetical protein At2g38410 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|3395431|gb|AAC28763.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|209529799|gb|ACI49794.1| At2g38410 [Arabidopsis thaliana] [NCBI NR]
  • gi|15224501|ref|NP_181375.1| VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 671 amino acids

    Gene Ontology:
    Cellular Component: Golgi stack [ISS]
    plasma membrane [IDA]
    Biological Process: intra-Golgi vesicle-mediated transport [ISS]
    intracellular protein transport [IEA][ISS]
    Molecular Function: protein transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSASATV AVDKATSDLL LGPDWTTNME ICDSVNSLHW QAKDVVKAVK KRLQHKSSRV  60
   61 QLLALTLLET LVKNCGDYLH HQVAEKNILG EMVKIVKKKA DMQVRDKILV MVDSWQQAFG 120
  121 GPEGKYPQYY WAYDELRRSG VEFPRRSPDA SPIITPPVSH PPLRQPQGGY GVPPAGYGVH 180
  181 QAGYGVPQAG YGIPQAGYGV PQAGYGIPQV GYGMPSGSSR RLDEAMATEV EGLSLSSIES 240
  241 MRDVMDLLGD MLQAVDPSDR EAVKDEVIVD LVERCRSNQK KLMQMLTSTG DDELLGRGLD 300
  301 LNDSLQILLA KHDAIASGSP LPVQASGSPL SVQASKPADS SPKSSEAKDS SSIAGSSSPI 360
  361 PATVSTGKSP IDEEYEEEED EFAQLARRHS KPPASVTTDP TSLESHNAAS NALALALPDP 420
  421 PPPVNTTKEQ DMIDLLSITL CTPSTPPAPS SQPSPPPPAG SDQNTHIYPQ PQPRFDSYVA 480
  481 PWAQQQQPQQ PQAQQGYSQH QQHQQQQGYS QPQHSQQQQG YSQLQQPQPQ QGYSQSQPQA 540
  541 QVQMQPSTRP QNPYEYPPPP WASTSANAYY TPRANASASY TDTSALAGRS LQQSNSFPTR 600
  601 AGDPQATSTA SNSGVSVGQK PFVPSYRLFE DLDVFGSADG KHNKPANSSN GSQNLSGSQT 660
  661 QQSMIGGRKM I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..217] PSI-BLAST 57.522879 Hrs
    2 View Details [218..404] PSI-BLAST 14.045757 Crystal structure of Tom1 GAT domain in complex with ubiquitin
    3 View Details [405..482] deduced N/A No confident structure predictions are available.
    4 View Details [483..671] PSI-BLAST 6.69897 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.24093737575291 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.71

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle