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Protein Overview: gi|4836916, gi|1...

General Information:
Name(s) found: gi|4836916 [NCBI NR]
gi|25289356 [NCBI NR]
gi|15220597 [NCBI NR]
Description(s) found:
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  • gi|4836916|gb|AAD30618.1|AC007153_10 putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • pir||G86190 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220597|ref|NP_172057.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
  • (Q9SYK7) F3F20.11 protein [athaliana3702.FASTAC.txt]
  • polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana]gi|25289356|pir||G86190 hypothetical protein [imported] - Arabidopsis thalianagi|4836916|gb|AAD30618.1| putative polygalacturonase [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polygalacturonase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | polygalacturonase, putative / pectinase, putative | chr1:1694285-1696057 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr1:1694286-1696058 REVERSE LENGTH=394 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F3F20.11 protein OS=Arabidopsis thaliana GN=F3F20.11 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 394 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSVIRFSL LFTLLTFIDV SISASNVFNV VSFGAKPDGV TDSTGAFLKA WQGACVSASS  60
   61 ATVVVPKGTF LLKVITFGGP CKSKITFQVA GTVIAPEDYR TFGNSGFWIL FNKVNRFSLV 120
  121 GGTFDARANG FWSCRKSGQN CPPGVRSISF NSAKDVIISG VKSMNSQVTH MTLNGCTNVV 180
  181 VRNVKLVAPG NSPNTDGFHV QHSTGVTFTG STVQTGDDCV AIGPGTRNLL ITKLACGPGH 240
  241 GVSIGSLAKE LKEDGVENVT VSSSVFTGSQ NGVRIKSWAR PSNGFVRTVF FQDLVMKNVE 300
  301 NPIIIDQNYC PTHEGCPNEY SGVKISQVTY KNIQGTSATQ EAMKLVCSKS SPCTGITLQD 360
  361 IKLTYNKGTP ATSFCFNAVG KSLGVIQPTS CLNR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..394] PSI-BLAST 42.39794 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle