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Protein Overview: gi|6017102, gi|1...

General Information:
Name(s) found: gi|6017102 [NCBI NR]
gi|15228573 [NCBI NR]
Description(s) found:
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  • gi|6017102|gb|AAF01585.1|AC009895_6 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15228573|ref|NP_187000.1| tatD-related deoxyribonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9SRQ4) T21P5.8 protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|15228573|ref|NP_187000.1| tatD-related deoxyribonuclease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 TatD-related deoxyribonuclease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tatD-related deoxyribonuclease family protein | chr3:832936-834357 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • deoxyribonuclease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | TatD related DNase | chr3:832929-834350 FORWARD LENGTH=272 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • T21P5.8 protein OS=Arabidopsis thaliana GN=T21P5.8 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 272 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters [IEA]
    deoxyribonuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFDAHCHL QDKRVIDKAS QLISAALAVG VTNFAVNGTS EKDWNLVKEM GETYPSVVPC  60
   61 FGLHPWFIAD RSPHWFKTLK KFFETTPTAA VGEIGLDKGP LAGGIDYSDQ LVVFRPQLEL 120
  121 AKELNKPVAV HCIDAFDDLL EIMRSIGPFP AGVILHSFNG SAEVVPKLAE LGAYFSFSGW 180
  181 FTYIDEKIAK KTLKSIPSDR LLLETDSPDG LPKSDESSSD PKPTLNEPAN ILAVLDYVAN 240
  241 LSNMKKEELA ELSYVNSVRL FSYPGSKLLT DQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..272] PSI-BLAST 78.69897 No description for 2gzxA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle