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Protein Overview: SMD3A_ARATH

General Information:
Name(s) found: SMD3A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6573711|gb|AAF17631.1|AC009978_7 T23E18.23 [Arabidopsis thaliana] [NCBI NR]
  • gi|6554488|gb|AAF16670.1|AC012394_19 putative small nuclear ribonucleoprotein Sm D3; 79504-78381 [Arabidopsis thaliana] [NCBI NR]
  • pir||E96790 hypothetical protein F15M4.20 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21592857|gb|AAM64807.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|15809764|gb|AAL06810.1| At1g76300/F15M4_20 [Arabidopsis thaliana] [NCBI NR]
  • gi|15223010|ref|NP_177757.1| SmD3 (snRNP core protein SmD3) [Arabidopsis thaliana] [NCBI NR]
  • gi|14190503|gb|AAK55732.1|AF380651_1 At1g76300/F15M4_20 [Arabidopsis thaliana] [NCBI NR]
  • Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana GN=SMD3A PE=2 SV=1 [Swiss-Prot]
  • (Q9S7E6) T23E18.23 (AT1G76300/F15M4_20) (Small nuclear ribonucleoprotein, putative) [athaliana3702.FASTAC.txt]
  • small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]gi|15809764|gb|AAL06810.1| At1g76300/F15M4_20 [Arabidopsis thaliana]gi|14190503|gb|AAK55732.1| At1g76300/F15M4_20 [Arabidopsis thaliana]gi|25347711|pir||E96790 hypothetical protein F15M4.2 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Small nuclear ribonucleoprotein D3 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SMD3 | SMD3 (SNRNP CORE PROTEIN SMD3) | chr1:28630851-28631974 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • T23E18.23 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative small nuclear ribonucleoprotein Sm D3; 79504-78381 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g76300/F15M4_20 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SmD3 | snRNP core protein SMD3 | chr1:28625957-28627080 FORWARD LENGTH=128 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g76300/F15M4_20 OS=Arabidopsis thaliana GN=F15M4.20 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 128 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][ISS]
    nuclear body [IDA]
    nucleolus [IDA]
    small nucleolar ribonucleoprotein complex [ISS]
    Biological Process: NONE FOUND
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSLGIPVK LLHESSGHIV SVEMKSGELY RGSMIECEDN WNCQLENITY TAKDGKVSQL  60
   61 EHVFIRGSLV RFLVIPDMLK NAPMFKDVRG KGKSASLGVG RGRGAAMRAK GTGRGTGGGR 120
  121 GAVPPVRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] PSI-BLAST 17.69897 D3 core SNRNP protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle