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Protein Overview: Y5360_ARATH

General Information:
Name(s) found: Y5360_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9758025|dbj|BAB08686.1| photoreceptor-interacting protein-like; non-phototropic hypocotyl-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240666|ref|NP_196864.1| phototropic-responsive NPH3 family protein [Arabidopsis thaliana] [NCBI NR]
  • Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 [Swiss-Prot]
  • (Q9FNB3) Photoreceptor-interacting protein-like, non-phototropic hypocotyl-like protein [athaliana3702.FASTAC.txt]
  • photoreceptor-interacting protein-like; non-phototropic hypocotyl-like protein [Arabidopsis thaliana]gi|15240666|ref|NP_196864.1| phototropic-responsive NPH3 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Phototropic-responsive NPH3 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | phototropic-responsive NPH3 family protein | chr5:4380435-4382500 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / signal transducer [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • photoreceptor-interacting protein-like; non-phototropic hypocotyl-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Phototropic-responsive NPH3 family protein | chr5:4380432-4382497 FORWARD LENGTH=591 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 591 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    Biological Process: response to light stimulus [IEA][ISS]
    Molecular Function: protein binding [IEA][ISS]
    signal transducer activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLKLGSKS EVFHLSGHTW LCKTGLKPDV MIQVVDESFH LHKFPLLSRS GYLETLFSKA  60
   61 SETTCVAQLH DIPGGPETFL LVAKFCYGVR IEVTPENAVS LRCAAEYLQM SENYGDANLI 120
  121 YLTESFLNDH VFVNWEDSIK ALEKSCEPKV LPLAEELHIV SRCIGSLAMK ACAEDNTSFF 180
  181 NWPISLPEGT TTTTIYWNGI QTKATSENWW FNDVSSFLDL PMYKRFIKTV ESRGVNAGII 240
  241 AASVTHYAKR NLPLLGCSRK SGSPSEEGTN YGDDMYYSHE EQRSLLEEIV ELLPGKKCVT 300
  301 STKFLLRLLR TSMVLHASQV TQETLEKRIG MQLDEAALED LLIPNMKYSG ETLYDTDSVQ 360
  361 RILDHFMLTF DSSIVEEKQM MGDSHPLKSI TKVASLIDGY LAEVASDENL KLSKFQALGA 420
  421 LIPEDVRPMD DGIYRAIDIY IKAHPWLTES EREQLCLLMN CQKLSLEACT HAAQNERLPL 480
  481 RVIVQVLFFE QMRLRTSIAG WLFGSEENND TSGALEGNKN TNANMVMHGM RERVFELEKE 540
  541 CMSMKQDLDK LVKTKEGRNF FSKIFGSRSK TKTSPCGKGG EDALVIPETK N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] PSI-BLAST 26.221849 No description for 2nn2A was found.
    2 View Details [134..275] MSA 4.664994 View MSA. No confident structure predictions are available.
    3 View Details [276..446] MSA 1.180985 View MSA. No confident structure predictions are available.
    4 View Details [447..591] MSA 2.076985 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle