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View Structure Prediction Details

Protein: Y5360_ARATH
Organism: Arabidopsis thaliana
Length: 591 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y5360_ARATH.

Description E-value Query
Range
Subject
Range
gi|218193389 - gi|218193389|gb|EEC75816.1| hypothetical protein OsI_12774 [Oryza sativa Indica Group]
gi|108710040 - gi|108710040|gb|ABF97835.1| transposon protein, putative, Mutator sub-class, expressed [Oryza sativa...
567.0 [0..1] [585..1]
gi|241941352, gi... - gi|242080467|ref|XP_002445002.1| hypothetical protein SORBIDRAFT_07g002590 [Sorghum bicolor], gi|241...
555.0 [0..1] [561..1]
Y1044_ARATH - BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2
553.0 [0..1] [584..1]
gi|102139797 - gi|102139797|gb|ABF69982.1| nonphototropic hypocotyl 3 (NPH3) family protein [Musa acuminata]
550.0 [0..11] [578..56]
gi|92896715 - gi|92896715|gb|ABE93313.1| BTB/POZ; NPH3 [Medicago truncatula]
531.0 [0..1] [574..1]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLKLGSKS EVFHLSGHTW LCKTGLKPDV MIQVVDESFH LHKFPLLSRS GYLETLFSKA  60
   61 SETTCVAQLH DIPGGPETFL LVAKFCYGVR IEVTPENAVS LRCAAEYLQM SENYGDANLI 120
  121 YLTESFLNDH VFV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.221849
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #2
Region A:
Residues: [134-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NWEDSIKALE KSCEPKVLPL AEELHIVSRC IGSLAMKACA EDNTSFFNWP ISLPEGTTTT  60
   61 TIYWNGIQTK ATSENWWFND VSSFLDLPMY KRFIKTVESR GVNAGIIAAS VTHYAKRNLP 120
  121 LLGCSRKSGS PSEEGTNYGD DM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [276-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YYSHEEQRSL LEEIVELLPG KKCVTSTKFL LRLLRTSMVL HASQVTQETL EKRIGMQLDE  60
   61 AALEDLLIPN MKYSGETLYD TDSVQRILDH FMLTFDSSIV EEKQMMGDSH PLKSITKVAS 120
  121 LIDGYLAEVA SDENLKLSKF QALGALIPED VRPMDDGIYR AIDIYIKAHP W

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [447-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTESEREQLC LLMNCQKLSL EACTHAAQNE RLPLRVIVQV LFFEQMRLRT SIAGWLFGSE  60
   61 ENNDTSGALE GNKNTNANMV MHGMRERVFE LEKECMSMKQ DLDKLVKTKE GRNFFSKIFG 120
  121 SRSKTKTSPC GKGGEDALVI PETKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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