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Protein Overview: gi|25406340, gi|...

General Information:
Name(s) found: gi|25406340 [NCBI NR]
gi|15221221 [NCBI NR]
gi|12324793 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • pir||B96772 probable type II intron maturase F1M20.3 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221221|ref|NP_177575.1| intron maturase, type II family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12324793|gb|AAG52355.1|AC011765_7 putative type II intron maturase; 7603-5342 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 753 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA splicing [IEA][ISS]
    RNA-dependent DNA replication [IEA][ISS]
    Molecular Function: RNA-directed DNA polymerase activity [IEA][ISS]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKETGMFS LAGELASLVE ESSSHVDDDS KPRSRMELKR SLELRLKKRV KEQCINGKFS  60
   61 DLLKKVIARP ETLRDAYDCI RLNSNVSITE RNGSVAFDSI AEELSSGVFD VASNTFSIVA 120
  121 RDKTKEVLVL PSVALKVVQE AIRIVLEVVF SPHFSKISHS CRSGRGRASA LKYINNNISR 180
  181 SDWCFTLSLN KKLDVSVFEN LLSVMEEKVE DSSLSILLRS MFEARVLNLE FGGFPKGHGL 240
  241 PQEGVLSRVL MNIYLDRFDH EFYRISMRHE ALGLDSKTDE DSPGSKLRSW FRRQAGEQGL 300
  301 KSTTEQDVAL RVYCCRFMDE IYFSVSGPKK VASDIRSEAI GFLRNSLHLD ITDETDPSPC 360
  361 EATSGLRVLG TLVRKNVRES PTVKAVHKLK EKVRLFALQK EEAWTLGTVR IGKKWLGHGL 420
  421 KKVKESEIKG LADSNSTLSQ ISCHRKAGME TDHWYKILLR IWMEDVLRTS ADRSEEFVLS 480
  481 KHVVEPTVPQ ELRDAFYKFQ NAAAAYVSSE TANLEALLPC PQSHDRPVFF GDVVAPTNAI 540
  541 GRRLYRYGLI TAKGYARSNS MLILLDTAQI IDWYSGLVRR WVIWYEGCSN FDEIKALIDN 600
  601 QIRMSCIRTL AAKYRIHENE IEKRLDLELS TIPSAEDIEQ EIQHEKLDSP AFDRDEHLTY 660
  661 GLSNSGLCLL SLARLVSESR PCNCFVIGCS MAAPAVYTLH AMERQKFPGW KTGFSVCIPS 720
  721 SLNGRRIGLC KQHLKDLYIG QISLQAVDFG AWR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..398] FFAS03 2.14 Crystal structure of RNA-dependent RNA Polymerase 3D from human rhinovirus serotype 16
    2 View Details [399..523] deduced N/A No confident structure predictions are available.
    3 View Details [524..753] Pfam 5.958607 No description for PF01348.12 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle