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Protein Overview: gi|15231771, gi|...

General Information:
Name(s) found: gi|15231771 [NCBI NR]
gi|11994377 [NCBI NR]
Description(s) found:
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  • gi|15231771|ref|NP_188020.1| exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] [NCBI NR]
  • gi|11994377|dbj|BAB02336.1| polygalacturonase; pectinase [Arabidopsis thaliana] [NCBI NR]
  • (Q9LVJ4) Polygalacturonase, pectinase [athaliana3702.FASTAC.txt]
  • polygalacturonase; pectinase [Arabidopsis thaliana]gi|15231771|ref|NP_188020.1| exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Exopolygalacturonase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase | chr3:4648614-4650233 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase; pectinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr3:4648607-4650226 REVERSE LENGTH=445 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase OS=Arabidopsis thaliana GN=At3g14040 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSHKASGV LLVLLVVMAT TIANGTPVVD TAKNAATAVE DTAKNAATAV GGAAASVGAK  60
   61 VTGAKPGGAS LDVKASGAKG DGKTDDSAAF AAAWKEACAA GSTITVPKGE YLVESLEFKG 120
  121 PCKGPVTLEL NGNFKAPATV KTTKPHAGWI DFENLADFTL NGNKAIFDGQ GSLAWKANDC 180
  181 AKTGKCNSLP INIRFTGLTN SKINSITSTN SKLFHMNILN CKNITLTDIG IDAPPESLNT 240
  241 DGIHIGRSNG VNLIGAKIKT GDDCVSIGDG TENLIVENVE CGPGHGISIG SLGRYPNEQP 300
  301 VKGVTVRKCL IKNTDNGVRI KTWPGSPPGI ASNILFEDIT MDNVSLPVLI DQEYCPYGHC 360
  361 KAGVPSKVKL SDVTIKNIKG TSATKVAVKL MCSKGVPCTN IALSDINLVH NGKEGPAVSA 420
  421 CSNIKPILSG KLVPAACTEV AKPGP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..445] PSI-BLAST 45.39794 Polygalacturonase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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