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Protein Overview: STIP1_ARATH

General Information:
Name(s) found: STIP1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|5734758|gb|AAD50023.1|AC007651_18 Similar to tuftelin-interacting protein [Arabidopsis thaliana] [NCBI NR]
  • pir||E86306 Similar to tuftelin-interacting protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220011|ref|NP_173150.1| D111/G-patch domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • Septin and tuftelin-interacting protein 1 homolog 1 OS=Arabidopsis thaliana GN=STIPL1 PE=2 SV=1 [Swiss-Prot]
  • (Q9SHG6) Similar to tuftelin-interacting protein [athaliana3702.FASTAC.txt]
  • Similar to tuftelin-interacting protein [Arabidopsis thaliana]gi|25354195|pir||E86306 Similar to tuftelin-interacting protein [imported] - Arabidopsis thalianagi|15220011|ref|NP_173150.1| D111/G-patch domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 D111/G-patch domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | D111/G-patch domain-containing protein | chr1:5837646-5840195 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Similar to tuftelin-interacting protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain | chr1:5837653-5840202 FORWARD LENGTH=849 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Similar to tuftelin-interacting protein OS=Arabidopsis thaliana GN=F20D23.23 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 849 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEYQDMERF SMDNDYEGGR WEGDEFVYQK RKEKRKQTKN DATYGIFAES DSDSDDSGGG  60
   61 GSRRKRRKDR DSGRKADLTK PVNFVSTGTV MPNQEIDKDS REHNDEKDRD KIEDNDMIDE 120
  121 DVEVRGGLGI GSSGLGLGFN ANGFDDEDNL LPGALGKKIA DRAKMRGKAK VEKRGQEGGG 180
  181 AKGGKKNTLG SDIGQFEKST KGIGMKLLEK MGYKGGGLGK NQQGIVAPIE AQLRPKNMGM 240
  241 GYNDFKEAKL PDLKKVEEKK IIGVSVSENE QSHGDRGGKN LWKKKKVRKA VYVTAEELLE 300
  301 KKQEAGFGGG QTIIDMRGPQ VRVVTNLENL DAEEKAKEAD VPMPELQHNL RLIVDLVEHE 360
  361 IQKIDRDLRN ERESALSLQQ EKEMLINEEE KQKRHLENME YIADEISRIE LENTSGNLTL 420
  421 DSLAIRFEDL QTSYPDDYKL CSLSTIACSL ALPLFIRMFQ GWDPLSDAVH GLKAISSWRK 480
  481 LLEVEEDHNI WVVSTPYSQL VSEVVLPAVR IAGINTWEPR DPEPMLRFLE TWETLLPSSV 540
  541 LQTILDTVVL PKLSTAVEYW DPRRELVAIH VWVHPWLPIL GQKLEFLYQI IQMKLSNVLD 600
  601 AWHPSDSSAY TILSPWKTVF DTTSWEQLMR RYIVPKLQLA LQEFQVNPAN QNLERFDWVM 660
  661 KWASAVPIHL MADMMERFFF PKWLDVLYHW LRAKPRFEEI QGWYYGWKEL FPQELTANER 720
  721 IRIQLKRGLD MLMEAVEGVE VSQPRAKANE RTQSVPAQAQ AQAKAQMDST EVLSLKEVLE 780
  781 VFAQEQELLF KPKPNRMHNG LQIYGFGNVS VIIDSVNQKL LAQKDGGWFL VTPDDLLRMH 840
  841 NNTTVSAKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..411] PSI-BLAST 13.221849 Heavy meromyosin subfragment
    2 View Details [412..494] deduced N/A No confident structure predictions are available.
    3 View Details [495..572] MSA 1.312994 View MSA. No confident structure predictions are available.
    4 View Details [573..671] deduced N/A No confident structure predictions are available.
    5 View Details [672..849] MSA 2.066957 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle