YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15236289, gi|...

General Information:
Name(s) found: gi|7270205 [NCBI NR]
gi|4262163 [NCBI NR]
gi|25371519 [NCBI NR]
gi|15236289 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|7270205|emb|CAB77820.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4262163|gb|AAD14463.1| putative ubiquitin-like protein [Arabidopsis thaliana] [NCBI NR]
  • pir||E85042 hypothetical protein AT4g03350 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15236289|ref|NP_192244.1| ubiquitin family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZQZ6) Putative ubiquitin-like protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|4262163|gb|AAD14463.1| putative ubiquitin-like protein [Arabidopsis thaliana]gi|25371519|pir||E85042 hypothetical protein AT4g03350 [imported] - Arabidopsis thalianagi|15236289|ref|NP_192244.1| ubiquitin family [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquitin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ubiquitin family protein | chr4:1473717-1474508 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative ubiquitin-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ubiquitin family protein | chr4:1473718-1474509 REVERSE LENGTH=263 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative ubiquitin-like protein OS=Arabidopsis thaliana GN=F4C21.29 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 263 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein modification process [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVDIDTETG SSFSITIDFG ETVLQIKEKI EKSQGIPVSK QILYLDGKAL EDDLHKIDYM  60
   61 ILFESLLLRI SPDADPNQSN EQTEQSKQID DKKQEFCGIQ DSSESKKLTR VMARRVHNVY 120
  121 SSLPAYSLDE LLGPKYSATV TVGGRTNQVV QTTEQASTSG TAKEVLRDSD SPVEKKIKTN 180
  181 PMKFTVHVKP YQEDTKMIQV EVNADDNVEE LRKELVKMQE RGELNLPHEA FHLVSSELPL 240
  241 IETKSFKWNR VADGDTIELI REK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] PSI-BLAST 28.0 Solution Structure of S5a UIM-1/Ubiquitin Complex
    2 View Details [96..263] FFAS03 0.979 Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0155013961187369 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle