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Protein Overview: TGD4_ARATH

General Information:
Name(s) found: TGD4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6729003|gb|AAF27000.1|AC016827_11 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18397783|ref|NP_566296.1| PDE320 (PIGMENT DEFECTIVE 320) [Arabidopsis thaliana] [NCBI NR]
  • gi|16323342|gb|AAL15384.1| AT3g06960/F17A9_11 [Arabidopsis thaliana] [NCBI NR]
  • gi|14194139|gb|AAK56264.1|AF367275_1 AT3g06960/F17A9_11 [Arabidopsis thaliana] [NCBI NR]
  • Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Arabidopsis thaliana GN=TGD4 PE=1 SV=1 [Swiss-Prot]
  • (Q9M903) F17A9.11 protein (AT3g06960/F17A9_11) [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|16323342|gb|AAL15384.1| AT3g06960/F17A9_11 [Arabidopsis thaliana]gi|14194139|gb|AAK56264.1| AT3g06960/F17A9_11 [Arabidopsis thaliana]gi|18397783|ref|NP_566296.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PDE320 | PDE320 (PIGMENT DEFECTIVE 320) | chr3:2194385-2196510 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT3g06960/F17A9_11 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PDE320 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PDE320, TGD4 | pigment defective 320 | chr3:2194379-2196504 REVERSE LENGTH=479 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3g06960/F17A9_11 OS=Arabidopsis thaliana GN=F17A9.11 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 479 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    endoplasmic reticulum [IDA]
    Biological Process: acylglycerol transport [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS  60
   61 PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL GQFDVQRFVT EIDKTKAFGR 120
  121 GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF 180
  181 NHEFPLHNLT AEAVWPGLFV DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK 240
  241 KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI 300
  301 IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF 360
  361 FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF QKICPEVLVS LQQQIVGPFS 420
  421 FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..290] deduced N/A No confident structure predictions are available.
    2 View Details [291..479] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle