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Protein Overview: gi|67633432, gi|...

General Information:
Name(s) found: gi|67633432 [NCBI NR]
gi|25289350 [NCBI NR]
gi|15218263 [NCBI NR]
gi|12321534 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|67633432|gb|AAY78640.1| glycoside hydrolase family 28 protein [Arabidopsis thaliana] [NCBI NR]
  • pir||A96498 probable polygalacturonase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15218263|ref|NP_175003.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12321534|gb|AAG50821.1|AC026757_2 polygalacturonase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 404 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIASTFKA LCLSFLFIAV ASRPTIRPKV FNVRRYGSRP DGKTDNANAF TSVWKRACTR  60
   61 ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAP ANPRDIKQDT WINFRYINNL 120
  121 SISGSGTLDG QGKYSWPLND CHKNTNCPKL AMTMGFAFVN NSRIKDITSL NSKMGHFNFF 180
  181 SVHRFNITGV TITAPGDSPN TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLDISNI 240
  241 KCGPGHGISV GSLGKNKDEK DVKHLTVRDT VFNGTSDGIR IKTWESSASK IVVSNFIYEN 300
  301 IQMIDVGKPI NIDQKYCPHP PCEHEKKGES HVQIQDIKLK NIYGTSNNIV AVNLQCSKSF 360
  361 PCKNVELIDI NLKHTGLEKG HSTAMCENVD GSVRSKMVPQ HCLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..404] PSI-BLAST 33.154902 POLYGALACTURONASE FROM ERWINIA CAROTOVORA SSP. CAROTOVORA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle