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Protein Overview: NRPD2_ARATH

General Information:
Name(s) found: NRPD2_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana GN=NRPD2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1172 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    DNA-directed RNA polymerase IV complex [IPI]
    RNA polymerase complex [IPI]
    DNA-directed RNA polymerase V complex [IPI]
    nuclear heterochromatin [IDA]
    Biological Process: DNA methylation [IDA][IMP]
    transcription [ISS]
    posttranscriptional gene silencing by RNA [IMP]
    gene silencing by RNA [IMP]
    production of siRNA involved in RNA interference [IGI][IMP]
    Molecular Function: DNA binding [ISS]
    DNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDMDIDVKD LEEFEATTGE INLSELGEGF LQSFCKKAAT SFFDKYGLIS HQLNSYNYFI  60
   61 EHGLQNVFQS FGEMLVEPSF DVVKKKDNDW RYATVKFGEV TVEKPTFFSD DKELEFLPWH 120
  121 ARLQNMTYSA RIKVNVQVEV FKNTVVKSDK FKTGQDNYVE KKILDVKKQD ILIGSIPVMV 180
  181 KSILCKTSEK GKENCKKGDC AFDQGGYFVI KGAEKVFIAQ EQMCTKRLWI SNSPWTVSFR 240
  241 SENKRNRFIV RLSENEKAED YKRREKVLTV YFLSTEIPVW LLFFALGVSS DKEAMDLIAF 300
  301 DGDDASITNS LIASIHVADA VCEAFRCGNN ALTYVEQQIK STKFPPAESV DECLHLYLFP 360
  361 GLQSLKKKAR FLGYMVKCLL NSYAGKRKCE NRDSFRNKRI ELAGELLERE IRVHLAHARR 420
  421 KMTRAMQKHL SGDGDLKPIE HYLDASVITN GLSRAFSTGA WSHPFRKMER VSGVVANLGR 480
  481 ANPLQTLIDL RRTRQQVLYT GKVGDARYPH PSHWGRVCFL STPDGENCGL VKNMSLLGLV 540
  541 STQSLESVVE KLFACGMEEL MDDTCTPLFG KHKVLLNGDW VGLCADSESF VAELKSRRRQ 600
  601 SELPREMEIK RDKDDNEVRI FTDAGRLLRP LLVVENLQKL KQEKPSQYPF DHLLDHGILE 660
  661 LIGIEEEEDC NTAWGIKQLL KEPKIYTHCE LDLSFLLGVS CAVVPFANHD HGRRVLYQSQ 720
  721 KHCQQAIGFS STNPNIRCDT LSQQLFYPQK PLFKTLASEC LKKEVLFNGQ NAIVAVNVHL 780
  781 GYNQEDSIVM NKASLERGMF RSEQIRSYKA EVDAKDSEKR KKMDELVQFG KTHSKIGKVD 840
  841 SLEDDGFPFI GANMSTGDIV IGRCTESGAD HSIKLKHTER GIVQKVVLSS NDEGKNFAAV 900
  901 SLRQVRSPCL GDKFSSMHGQ KGVLGYLEEQ QNFPFTIQGI VPDIVINPHA FPSRQTPGQL 960
  961 LEAALSKGIA CPIQKEGSSA AYTKLTRHAT PFSTPGVTEI TEQLHRAGFS RWGNERVYNG1020
 1021 RSGEMMRSMI FMGPTFYQRL VHMSEDKVKF RNTGPVHPLT RQPVADRKRF GGIKFGEMER1080
 1081 DCLIAHGASA NLHERLFTLS DSSQMHICRK CKTYANVIER TPSSGRKIRG PYCRVCVSSD1140
 1141 HVVRVYVPYG AKLLCQELFS MGITLNFDTK LC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1172] PSI-BLAST 1000.0 RBP2


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle