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Protein Overview: NDB4_ARATH

General Information:
Name(s) found: NDB4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|91806220|gb|ABE65838.1| pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4454468|gb|AAD20915.1| putative NADH-ubiquinone oxireductase [Arabidopsis thaliana] [NCBI NR]
  • pir||E84593 probable NADH-ubiquinone oxireductase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15225428|ref|NP_179673.1| NDB4 (NAD(P)H dehydrogenase B4); NADH dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial OS=Arabidopsis thaliana GN=NDB4 PE=1 SV=1 [Swiss-Prot]
  • (Q9SKT7) Putative NADH-ubiquinone oxireductase [athaliana3702.FASTAC.txt]
  • putative NADH-ubiquinone oxireductase [Arabidopsis thaliana]gi|15225428|ref|NP_179673.1| pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana]gi|25285262|pir||E84593 probable NADH-ubiquinone oxireductase [imported] - Arabid [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pyridine nucleotide-disulphide oxidoreductase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: NDB4 | NDB4 (NAD(P)H DEHYDROGENASE B4); NADH dehydrogenase | chr2:8960333-8962780 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • NADH dehydrogenase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative NADH-ubiquinone oxireductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NDB4 | NAD(P)H dehydrogenase B4 | chr2:8953252-8955699 REVERSE LENGTH=582 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • NAD(P)H dehydrogenase B4, mitochondrial OS=Arabidopsis thaliana GN=NDB4 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 582 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    extrinsic to mitochondrial inner membrane [IDA]
    plastid [IDA]
    Biological Process: NONE FOUND
    Molecular Function: NADH dehydrogenase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHSFYQRA SSLFKAYPST SKILLLSTFS GGGGVLVYSD SNPLKRILHA DATLDSDGNP  60
   61 IRKKKVVVLG SGWSGYSFLS YLNNPNYDVQ VVSPRNFFLF TPLLPSVTNG TVEARSIVEP 120
  121 IRGLMRKKGF EYKEAECVKI DASNKKIHCR SKEGSSLKGT TEFDMDYDIL ILAVGAKPNT 180
  181 FNTPGVEEHA YFLKEAEDAL NIRHSVIDCF ERASLPNLTE EERKKILHFV VVGGGPTGVE 240
  241 FSAELHDFLV QDVAKIYPKV QEFTKITLLE AGDHILNMFD KRITAFAEEK FQRDGIDLKT 300
  301 GSMVVGVTAD EISTKERETG KIVSEPYGMV VWSTGIGSRP VIKDFMQQIG QGQRRVLATD 360
  361 EWLRVEGCDG VYALGDTATI NQRRVMEDIA AIFNKADKGN TGTLKKKDFN SVVKDICQRY 420
  421 PQVELYLKKN KLKNIANLLK SANGEDTQVN IEKFKQALSE VDSQMKNLPA TAQVASQQGK 480
  481 YLAKCFNKME KCEKKPEGPL RFRGEGRHRF QPFRYRHFGS FAPLGGEQTA AELPGDWVSI 540
  541 GHSSQWLWYS VYASKLVSWR TRMLVISDWT RRFVFGRDSS SI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..60] PSI-BLAST 5.0 No description for 2gagA was found.
    2 View Details [61..582] PSI-BLAST 82.39794 Dihydrolipoamide dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.03768022092949 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.78682363509228 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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