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Protein Overview: gi|15229058, gi|...

General Information:
Name(s) found: gi|67633678 [NCBI NR]
gi|6522571 [NCBI NR]
gi|15229058 [NCBI NR]
gi|11357281 [NCBI NR]
Description(s) found:
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  • gi|67633678|gb|AAY78763.1| glycoside hydrolase family 28 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|6522571|emb|CAB62015.1| endo-polygalacturonase-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15229058|ref|NP_190464.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T46135 endo-polygalacturonase-like protein - Arabidopsis thaliana [NCBI NR]
  • (Q9SMT3) Endo-polygalacturonase-like protein [athaliana3702.FASTAC.txt]
  • endo-polygalacturonase-like protein [Arabidopsis thaliana]gi|11357281|pir||T46135 endo-polygalacturonase-like protein - Arabidopsis thalianagi|15229058|ref|NP_190464.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr3:18159002-18160972 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • endo-polygalacturonase-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • glycoside hydrolase family 28 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr3:18148017-18149987 FORWARD LENGTH=469 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Endo-polygalacturonase-like protein OS=Arabidopsis thaliana GN=T2J13.210 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 469 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN  60
   61 TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF TLFIQRGATI LASQDESEWP 120
  121 VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT 180
  181 RPYLIEILFS KNIQISNITL IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC 240
  241 TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG 300
  301 GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE 360
  361 GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI CISNVTIALA AKAKKMQWNC 420
  421 TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..469] PSI-BLAST 51.522879 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle