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Protein Overview: gi|15240081, gi|...

General Information:
Name(s) found: gi|15240081 [NCBI NR]
gi|10178108 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|15240081|ref|NP_196270.1| SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10178108|dbj|BAB11401.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 679 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTSMHKDLR SRQNNSNQVG ADSESTRLVN IRNLAKIVND SRFRSLSPDT PATHDAQDYL  60
   61 WPPSLDMPLL APPVNFSHLP LGITFTRKEL ELIKLTAQFV AVYGKYFQRE LTTRVVESPL 120
  121 FEFLKPTDSR NSFYTRIILG YQGVLMPSQK LKTKSEVFDG FSKLIAQVPV KDEDDVEMAM 180
  181 TDLHAYEYFA NMSINDLRAP APVKFAFLTR GVTFTRNELD TIKLTAQFVA VYGTLFRTEL 240
  241 MKRVFISPKF DFFKSTDSKC SFYLRLVDGY SRVLRRSRKN GAGLGEVVVG FLKLLDQVVE 300
  301 KKDAVEMALT DLHALEFFAN VDGGVLQPRP EQYHPMMPTV PPLIMPQLGS QFTQLQVPQP 360
  361 SCSPPVRMMS PPRPQNDLQS GQSNSNKAPA SVAPIEPPPE IRSCVENTAL IVSKNGLEIE 420
  421 RKMMELSMND ARHRFVWSTD PYHAFYQLKL AEYRAQNQDR AHDIQPNVLR SFGFGFEFPE 480
  481 KEITLKELGI IKLTAQFMAR YGMNFVQGLR KRVVGNPQFK FLESTNNSRF SFYNGLVIAY 540
  541 SRVLMPSKML SKSDDCTATV VDGFLSCLQL EKREEGVDID MIDLLDCFAR LEDADYSANV 600
  601 PQPQHLSTQM QPPHTPETSP PLPLPLKNES SPVLADQHPD SSTIDDEWQV IDFTGQSLPD 660
  661 NVASLKDKTA GGIQIPANK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] deduced N/A No confident structure predictions are available.
    2 View Details [77..168] PSI-BLAST 17.522879 No description for 2dt6A was found.
    3 View Details [169..311] PSI-BLAST 18.045757 No description for 2dt7B was found.
    4 View Details [312..371] deduced N/A No confident structure predictions are available.
    5 View Details [372..493] FFAS03 2.22 No description for 2e60A was found.
    6 View Details [494..612] MSA 3.068985 View MSA. No confident structure predictions are available.
    7 View Details [613..679] PSI-BLAST 10.69897 Solution structure of Ubiquitin-like domain in splicing factor AAL91182


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle