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Protein Overview: UGE4_ARATH

General Information:
Name(s) found: UGE4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|45752702|gb|AAS76249.1| At1g64440 [Arabidopsis thaliana] [NCBI NR]
  • gi|40823151|gb|AAR92262.1| At1g64440 [Arabidopsis thaliana] [NCBI NR]
  • gi|15217653|ref|NP_176625.1| RHD1 (ROOT HAIR DEFECTIVE 1); UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] [NCBI NR]
  • gi|12323470|gb|AAG51709.1|AC066689_8 UDP-galactose 4-epimerase, putative; 6572-4109 [Arabidopsis thaliana] [NCBI NR]
  • UDP-glucose 4-epimerase 4 OS=Arabidopsis thaliana GN=UGE4 PE=1 SV=1 [Swiss-Prot]
  • (Q9C7W7) UDP-galactose 4-epimerase, putative [athaliana3702.FASTAC.txt]
  • At1g64440 [Arabidopsis thaliana]gi|12323470|gb|AAG51709.1| UDP-galactose 4-epimerase, putative; 6572-4109 [Arabidopsis thaliana]gi|15217653|ref|NP_176625.1| UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, puta [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 UDP-glucose 4-epimerase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: UGE4, REB1, RHD1 | RHD1 (ROOT HAIR DEFECTIVE 1); UDP-glucose 4-epimerase | chr1:23940765-23943228 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g64440 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • UDP-galactose 4-epimerase, putative; 6572-4109 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RHD1 (ROOT HAIR DEFECTIVE 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RHD1, REB1, UGE4 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:23937102-23939565 FORWARD LENGTH=348 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 348 amino acids

    Gene Ontology:
    Cellular Component: Golgi stack [IDA]
    Biological Process: root epidermal cell differentiation [IMP]
    xyloglucan biosynthetic process [IMP]
    [NOT]rhamnogalacturonan II biosynthetic process [IMP]
    [NOT]rhamnogalacturonan I biosynthetic process [IMP]
    plant-type cell wall biogenesis [TAS]
    cell wall biogenesis [IMP]
    Molecular Function: UDP-glucose 4-epimerase activity [IDA][IGI][TAS]
    protein dimerization activity [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGNILVTGG AGYIGSHTVL QLLLGGYNTV VIDNLDNSSL VSIQRVKDLA GDHGQNLTVH  60
   61 QVDLRDKPAL EKVFSETKFD AVMHFAGLKA VGESVAKPLL YYNNNLIATI TLLEVMAAHG 120
  121 CKKLVFSSSA TVYGWPKEVP CTEESPLSGM SPYGRTKLFI EDICRDVQRG DPEWRIIMLR 180
  181 YFNPVGAHPS GRIGEDPCGT PNNLMPYVQQ VVVGRLPNLK IYGTDYTTKD GTGVRDYIHV 240
  241 VDLADGHICA LQKLDDTEIG CEVYNLGTGK GTTVLEMVDA FEKASGMKIP LVKVGRRPGD 300
  301 AETVYASTEK AERELNWKAN FGIEEMCRDQ WNWASNNPFG YGSSPNST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..348] PSI-BLAST 93.045757 Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • UDP-glucose 4-epimerase activity
    		•  2.13934644118967 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.868888700854563 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.82673050487418 bayes_pls_golite062009
  • DNA binding
    		•  0.790382977752475 bayes_pls_golite062009
  • binding
    		•  0.784517759335365 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.613310508772122 bayes_pls_golite062009
  • transcription factor activity
    		•  0.11102650759187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle