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Protein Overview: gi|15242697, gi|...

General Information:
Name(s) found: gi|15242697 [NCBI NR]
gi|115311487 [NCBI NR]
gi|10177310 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|15242697|ref|NP_201134.1| coproporphyrinogen oxidase-related [Arabidopsis thaliana] [NCBI NR]
  • gi|115311487|gb|ABI93924.1| At5g63290 [Arabidopsis thaliana] [NCBI NR]
  • gi|10177310|dbj|BAB10571.1| oxygen-independent coproporphyrinogen-like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 484 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    cytoplasm [IEA]
    Biological Process: porphyrin biosynthetic process [IEA]
    Molecular Function: oxidoreductase activity [ISS]
    coproporphyrinogen oxidase activity [IEA]
    catalytic activity [IEA]
    iron-sulfur cluster binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTTISPIF SSFTGKPKCS SKLFFRAFSK VVLQDTPPSA RRNASTNLTT LHKGPPTSAY  60
   61 VHLPFCRKRC HYCDFPILAL GMSSSSARPS NVYEEGKEDD PRITNYVNLL VREIKATRTD 120
  121 FDTNPNLETV FFGGGTPSLV PPKLVSLILE TLSLNFGLSP DAEISMEMDP GTFDGQKLKD 180
  181 LMKLGVNRVS LGVQAFQDEL LKACGRAHGV SQVYEAIEFV KECGVENWSM DLISSLPHQT 240
  241 LEMWEESLRL AIESQPNHVS VYDLQVEQGT KFGNLYTPGQ SPLPSETQSA EFYKTASSML 300
  301 RGAGYEHYEV SSYSRDGFKC KHNLIYWKNK PFYAFGLGSA SYVGGLRFSR PRRLKEYTNY 360
  361 VADLENGAAN WCGNGDVDLK DVATDILMLS FRTSKGLELK EFGEAFGSEV VKSICKVYEP 420
  421 YVESGHIVCL DDMRSEVMID EFKTLVANDE VKIEDHVRYL RLKDPDGFLL SNELISLSFG 480
  481 VVAP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..484] PSI-BLAST 102.0 Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • coproporphyrinogen oxidase activity
    		•  2.41520078366277 bayes_pls_golite062009
  • biotin synthase activity
    		•  2.08611410724267 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  1.93582371651697 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  1.85924424492023 bayes_pls_golite062009
  • catalytic activity
    		•  1.48331922124015 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  0.947420499060224 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  0.107588242235537 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle