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Protein Overview: gi|25511660, gi|...

General Information:
Name(s) found: gi|4056454 [NCBI NR]
gi|25511660 [NCBI NR]
gi|15220851 [NCBI NR]
Description(s) found:
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  • gi|4056454|gb|AAC98027.1| Contains repeated region with similarity to gb|U43627 extensin (atExt1) gene from Arabidopsis thaliana. ESTs gb|Z34165 and gb|Z18788 come from this gene [NCBI NR]
  • pir||C86371 99.7K hypothetical protein F5O8.27 - Arabidopsis thaliana [NCBI NR]
  • gi|15220851|ref|NP_173784.1| proline-rich extensin-like family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZUC3) F5O8.27 protein [athaliana3702.FASTAC.txt]
  • Contains repeated region with similarity to gb|U43627 extensin (atExt1) gene from Arabidopsis thaliana. ESTs gb|Z34165 and gb|Z18788 come from this genegi|25511660|pir||C86371 99.7K hypothetical protein F5O8.27 - Arabidopsis thalianagi|15220851|ref|NP_ [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Proline-rich extensin-like family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | proline-rich extensin-like family protein | chr1:8388644-8391331 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Contains repeated region with similarity to gb|U43627 extensin (atExt1) gene from Arabidopsis thaliana. ESTs gb|Z34165 and gb|Z18788 come from this gene [nr-271106-contam.fasta]
  • structural constituent of cell wall [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Proline-rich extensin-like family protein | chr1:8388655-8391342 FORWARD LENGTH=895 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F5O8.27 protein OS=Arabidopsis thaliana GN=F5O8.27 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 895 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: plant-type cell wall organization [IEA]
    Molecular Function: structural constituent of cell wall [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAASYEPYT YSSPPPPLYD SPTPKVDYKS PPPPYVYSSP PPPLSYSPSP KVDYKSPPPP  60
   61 YVYSSPPPPY YSPSPKVEYK SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYSSPPPPY 120
  121 YSPSPKPTYK SPPPPYVYNS PPPPYYSPSP KVEYKSPPPP YVYSSPPPPY YSPSPKVDYK 180
  181 SPPPPYVYNS PPPPYYSPSP KPTYKSPPPP YIYSSPPPPY YSPSPKPVYK SPPPPYVYSS 240
  241 PPPPYYSPSP KPAYKSPPPP YVYSSPPPPY YSPSPKPIYK SPPPPYVYNS PPPPYYSPSP 300
  301 KPAYKSPPPP YVYSFPPPPY YSPSPKPVYK SPPPPYVYNS PPPPYYSPSP KPAYKSPPPP 360
  361 YVYSSPPPPY YSPSPKPTYK SPPPPYVYSS PPPPYYSPSP KPVYKSPPPP YIYNSPPPPY 420
  421 YSPSPKPSYK SPPPPYVYSS PPPPYYSPSP KLTYKSSPPP YVYSSPPPPY YSPSPKVVYK 480
  481 SPPPPYVYSS PPPPYYSPSP KPSYKSPPPP YVYNSPPPPY YSPSPKVIYK SPPHPHVCVC 540
  541 PPPPPCYSHS PKIEYKSPPT PYVYHSPPPP PYYSPSPKPA YKSSPPPYVY SSPPPPYYSP 600
  601 APKPVYKSPP PPYVYNSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPYYSP TPKPTYKSPP 660
  661 PPYVYSSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPYYSP APKPTYKSPP PPYVYSSPPP 720
  721 PYYSPSPKPT YKSPPPPYVY SSPPPPPYYS PSPKVEYKSP PPPYVYSSPP PPYYSPSPKV 780
  781 EYKSPPPPYV YSSPPPPPYY SPSPKVEYKS PPPPYVYSSP PPPTYYSPSP KVEYKSPPPP 840
  841 YVYNSPPPPA YYSPSPKIEY KSPPPPYVYS SPPPPSYSPS PKAEYKSPPP PSLYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..820] PSI-BLAST 9.522879 No description for 1y0fA was found.
    2 View Details [821..895] Pfam 8.60206 No description for PF04554.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle