YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25511660, gi\|...
Organism:	Arabidopsis thaliana
Length:	895 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25511660, gi|....

Description	E-value	Query Range	Subject Range
gi\|70878483 - gi\|70878483\|gb\|EAN91735.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71649745 - gi\|71649745\|ref\|XP_813586.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	317.0	[0..2]	[894..724]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	280.0	[0..2]	[894..686]
FP1_MYTCO - Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1	236.0	[0..16]	[881..35]
gi\|145332667, gi... - gi\|145332667\|ref\|NP_001078199.1\| structural constituent of cell wall [Arabidopsis thaliana], gi\|1199...	234.0	[0..1]	[895..337]
gi\|169767634 - gi\|169767634\|ref\|XP_001818288.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766143 - gi\|83766143\|dbj\|BAE56286.1\| unnamed protein product [Aspergillus oryzae]	228.0	[0..5]	[890..38]
FP1_MYTED - Adhesive plaque matrix protein (Fragment) OS=Mytilus edulis GN=FP1 PE=1 SV=1	218.0	[0..5]	[894..5]
gi\|18025526, gi\|... - gi\|51518075\|ref\|YP_068003.1\| LF3 [Macacine herpesvirus 4], gi\|18025526\|gb\|AAK95470.1\| LF3 [cercopith...	213.0	[0..48]	[878..17]
gi\|109498320 - gi\|109498320\|ref\|XP_001074557.1\| PREDICTED: similar to dumpy CG33196-PB [Rattus norvegicus]	210.0	[0..3]	[880..10]

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Predicted Domain #1

Region A:
Residues: [1-820]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAASYEPYT YSSPPPPLYD SPTPKVDYKS PPPPYVYSSP PPPLSYSPSP KVDYKSPPPP  60
   61 YVYSSPPPPY YSPSPKVEYK SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYSSPPPPY 120
  121 YSPSPKPTYK SPPPPYVYNS PPPPYYSPSP KVEYKSPPPP YVYSSPPPPY YSPSPKVDYK 180
  181 SPPPPYVYNS PPPPYYSPSP KPTYKSPPPP YIYSSPPPPY YSPSPKPVYK SPPPPYVYSS 240
  241 PPPPYYSPSP KPAYKSPPPP YVYSSPPPPY YSPSPKPIYK SPPPPYVYNS PPPPYYSPSP 300
  301 KPAYKSPPPP YVYSFPPPPY YSPSPKPVYK SPPPPYVYNS PPPPYYSPSP KPAYKSPPPP 360
  361 YVYSSPPPPY YSPSPKPTYK SPPPPYVYSS PPPPYYSPSP KPVYKSPPPP YIYNSPPPPY 420
  421 YSPSPKPSYK SPPPPYVYSS PPPPYYSPSP KLTYKSSPPP YVYSSPPPPY YSPSPKVVYK 480
  481 SPPPPYVYSS PPPPYYSPSP KPSYKSPPPP YVYNSPPPPY YSPSPKVIYK SPPHPHVCVC 540
  541 PPPPPCYSHS PKIEYKSPPT PYVYHSPPPP PYYSPSPKPA YKSSPPPYVY SSPPPPYYSP 600
  601 APKPVYKSPP PPYVYNSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPYYSP TPKPTYKSPP 660
  661 PPYVYSSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPYYSP APKPTYKSPP PPYVYSSPPP 720
  721 PYYSPSPKPT YKSPPPPYVY SSPPPPPYYS PSPKVEYKSP PPPYVYSSPP PPYYSPSPKV 780
  781 EYKSPPPPYV YSSPPPPPYY SPSPKVEYKS PPPPYVYSSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	1y0fA
Description:	No description for 1y0fA was found.

Predicted Domain #2

Region A:
Residues: [821-895]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPTYYSPSP KVEYKSPPPP YVYNSPPPPA YYSPSPKIEY KSPPPPYVYS SPPPPSYSPS  60
   61 PKAEYKSPPP PSLYY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.60206
Match:	PF04554.5
Description:	No description for PF04554.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits