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Protein Overview: PUM3_ARATH

General Information:
Name(s) found: PUM3_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|3980417|gb|AAC95220.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • pir||A84693 hypothetical protein At2g29140 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15227038|ref|NP_180478.1| APUM3 (Arabidopsis Pumilio 3); RNA binding / binding [Arabidopsis thaliana] [NCBI NR]
  • Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1 [Swiss-Prot]
  • (Q9ZW02) Putative pumilio/Mpt5 family RNA-binding protein [athaliana3702.FASTAC.txt]
  • putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis thaliana]gi|25354254|pir||A84693 hypothetical protein At2g29140 [imported] - Arabidopsis thalianagi|15227038|ref|NP_180478.1| pumilio/Puf RNA-binding domain-containing protein [Arabidopsis th [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pumilio/Puf RNA-binding domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: APUM3 | APUM3 (ARABIDOPSIS PUMILIO 3); RNA binding | chr2:12538469-12542137 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: APUM3, PUM3 | pumilio 3 | chr2:12531392-12535060 FORWARD LENGTH=964 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 964 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [IEA][ISS]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIPELGRRP MHRGNEDSSF GDDYEKEIGV LLGEQQRRQV EADELERELN LYRSGSAPPT  60
   61 VDGSLSAAGG LFSGGGGASF LEFGGVNKGN GFGGDDEEFR KDPAYLSYYY ANMKLNPRLP 120
  121 PPLMSREDLR VAQRLKGSNN VLGGVGDRRK VNDSRSLFSM PPGFEAGKPG ASASEWDANG 180
  181 LIGLGLGGKQ KSFADIFQAD MGHPVVQQPS RPASRNTFDE NVDSNNNLSP SASQGIGAPS 240
  241 PYCYAAVLGS SLSRNGTPDP QGIARVPSPC LTPIGSGRVS SNDKRNTSNQ SPFNGVTSGL 300
  301 NESSDLVNAL SGLNLSGTGG LDERGQAEQD VEKVRNYMFG LQDGHNEVNP HGFPNRSDQA 360
  361 RGTASCRNSQ MRGSQGSAYN SGSGVANPYQ HHDSPNYYAL NPAVASMMAN QLGTNNYSPM 420
  421 YENASATLGY SAMDSRLHGG SFVSSGQNLS ESRNIGRVGN RMMEGGTGHP SHLADPMYHQ 480
  481 YARFSENADS FDLLNDPSMD RNYGNSYMNM LEIQRAYLGS QKSQYGLPYK SGSPNSHSYY 540
  541 GSPTFGSNMS YPGSPLAHHG MPNSLMSPYS PMRRGEVNMR YPAATRNYTG GVMGSWHMDA 600
  601 SLDEGFGSSM LEEFKSNKTR GFELSEIAGH VVEFSSDQYG SRFIQQKLET ATTDEKNMVY 660
  661 EEIMPKALAL MTDVFGNYVI QKFFEHGLPP QRRELGEKLI DNVLPLSLQM YGCRVIQKAI 720
  721 EVVDLDQKIQ MVKELDGHVM RCVRDQNGNH VVQKCIECVP EENIEFIIST FFGHVVTLST 780
  781 HPYGCRVIQR VLEHCHNPDT QSKVMEEILS TVSMLTQDQY GNYVVQHVLE HGKPDERTVI 840
  841 IKELAGKIVQ MSQQKFASNV VEKCLTFGGP EERELLVNEM LGTTDENEPL QAMMKDQFAN 900
  901 YVVQKVLETC DDQQRELILT RIKVHLNALK KYTYGKHIVA RVEKLVAAGE RRMALQSLPQ 960
  961 PLVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..538] PSI-BLAST 13.0 No description for 1y0fA was found.
    2 View Details [539..611] deduced N/A No confident structure predictions are available.
    3 View Details [612..964] PSI-BLAST 145.0 Pumilio 1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle