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Protein Overview: gi|30689599, gi|...

General Information:
Name(s) found: gi|89000943 [NCBI NR]
gi|7486479 [NCBI NR]
gi|3212877 [NCBI NR]
gi|30689599 [NCBI NR]
gi|15224810 [NCBI NR]
Description(s) found:
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  • gi|89000943|gb|ABD59061.1| At2g44060 [Arabidopsis thaliana] [NCBI NR]
  • pir||T00686 similar to late embryogenesis abundant proteins [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|3212877|gb|AAC23428.1| similar to late embryogenesis abundant proteins [Arabidopsis thaliana] [NCBI NR]
  • gi|30689599|ref|NP_850408.1| late embryogenesis abundant family protein / LEA family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15224810|ref|NP_181934.1| late embryogenesis abundant family protein / LEA family protein [Arabidopsis thaliana] [NCBI NR]
  • (O80576) Putative LEA (Late embryogenesis abundant) protein [athaliana3702.FASTAC.txt]
  • similar to late embryogenesis abundant proteins [Arabidopsis thaliana]gi|7486479|pir||T00686 similar to late embryogenesis abundant proteins [imported] - Arabidopsis thalianagi|30689599|ref|NP_850408.1| late embryogenesis abundant family protein / LEA f [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Late embryogenesis abundant family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | late embryogenesis abundant family protein / LEA family protein | chr2:18233998-18235064 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • similar to late embryogenesis abundant proteins [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g44060 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Late embryogenesis abundant protein, group 2 | chr2:18226922-18227988 FORWARD LENGTH=325 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g44060 OS=Arabidopsis thaliana GN=At2g44060 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 325 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    plasma membrane [IDA]
    Biological Process: embryonic development ending in seed dormancy [ISS]
    response to desiccation [ISS]
    response to cadmium ion [IEP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSEDKPEI ISRVVHQEGD VEIVDRSQKD KDEEKEEGKG GFLDKVKDFI HDIGEKLEGT  60
   61 IGFGKPTADV SAIHIPKINL ERADIVVDVL VKNPNPVPIP LIDVNYLVES DGRKLVSGLI 120
  121 PDAGTLKAHG EETVKIPLTL IYDDIKSTYN DINPGMIIPY RIKVDLIVDV PVLGRLTLPL 180
  181 EKCGEIPIPK KPDVDIEKIK FQKFSLEETV AILHVRLQNM NDFDLGLNDL DCEVWLCDVS 240
  241 IGKAEIADSI KLDKNGSGLI NVPMTFRPKD FGSALWDMIR GKGTGYTIKG NIDVDTPFGA 300
  301 MKLPIIKEGG ETRLKKEDDD DDDEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..192] PSI-BLAST 48.522879 Solution Structure of a putative late embryogenesis abundant (LEA) protein At2g46140.1
    2 View Details [193..325] FFAS03 5.29 Solution structure of AT1g01470 from Arabidopsis Thaliana


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle