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Protein Overview: TPS30_ARATH

General Information:
Name(s) found: TPS30_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9294130|dbj|BAB01981.1| 5-epi-aristolochene syntase-like protein; terpene synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|15232009|ref|NP_189746.1| terpene synthase/cyclase family protein [Arabidopsis thaliana] [NCBI NR]
  • Terpenoid synthase 30 OS=Arabidopsis thaliana GN=TPS30 PE=2 SV=1 [Swiss-Prot]
  • (Q9LH31) 5-EpI-aristolochene syntase-like protein, terpene synthase [athaliana3702.FASTAC.txt]
  • 5-epi-aristolochene syntase-like protein; terpene synthase [Arabidopsis thaliana]gi|15232009|ref|NP_189746.1| terpene synthase/cyclase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Terpene synthase/cyclase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | terpene synthase/cyclase family protein | chr3:13036171-13039061 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 5-epi-aristolochene syntase-like protein; terpene synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:13032458-13035348 REVERSE LENGTH=604 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 604 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: metabolic process [IEA]
    Molecular Function: magnesium ion binding [IEA]
    lyase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVARTVFGL GTLSYLHQAP LFLKTSQSLF PRPSLSLKPM KHDFVCVKAT TKSSTSDDLE  60
   61 SGRPSILFSP SIWGDYFLSV SVDDSEFDDI AREIESVMKP YVRDRLISSH NSNKDKIRLI 120
  121 HLLISLGISY YFESEIEMIL NKAFEELDMI IAEEDDLETI SIMFEVFRLY QHKMSCDSFV 180
  181 RFKGEDGRLK ESLVGDVRGM LQLYQAAHLG TPSDQYIMEE AKSFTRNHLE SLVESTTIPP 240
  241 HFSSHIRDAL YIDRYHNMEI LVARKYISFY EQEEGHDLTL LKFGKLSFNY CRLHYIQELK 300
  301 TLTKWWKDQD IPSNLPCVRD RIVETYFPTL GLYFEPRFSL GRIIIAKMTI IVVALNDVCD 360
  361 SYATYPEAKS LIDSLQRWDI EAIDELPNYS RIVLRLILET IGEIEREMKP RGRSASVQHT 420
  421 IDETKSLGRA YLALSKWASE GYMPTFDEYM EVGEVTGGMD DFALYSFIAM EDCDEKPLYE 480
  481 WFDSKPKILQ ALSVLYRINN DIVTYEREMS KGEVVNGVNS YMNQHGVTKE EAVEELRKMA 540
  541 RDNYKIVMEE LLTITDVPRP VLVRCLNLAR LFDVFCKHGN DEFTYPHGNL KDLITSIFIH 600
  601 PIPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..604] PSI-BLAST 1000.0 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.87397377711135 bayes_pls_golite062009
  • transferase activity
    		•  1.34929557841705 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.22586398285056 bayes_pls_golite062009
  • prenyltransferase activity
    		•  0.302854173865421 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.57

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle