YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TPS30_ARATH
Organism: Arabidopsis thaliana
Length: 604 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPS30_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
705.0 [0..46] [604..5]

Back

Predicted Domain #1
Region A:
Residues: [1-604]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVARTVFGL GTLSYLHQAP LFLKTSQSLF PRPSLSLKPM KHDFVCVKAT TKSSTSDDLE  60
   61 SGRPSILFSP SIWGDYFLSV SVDDSEFDDI AREIESVMKP YVRDRLISSH NSNKDKIRLI 120
  121 HLLISLGISY YFESEIEMIL NKAFEELDMI IAEEDDLETI SIMFEVFRLY QHKMSCDSFV 180
  181 RFKGEDGRLK ESLVGDVRGM LQLYQAAHLG TPSDQYIMEE AKSFTRNHLE SLVESTTIPP 240
  241 HFSSHIRDAL YIDRYHNMEI LVARKYISFY EQEEGHDLTL LKFGKLSFNY CRLHYIQELK 300
  301 TLTKWWKDQD IPSNLPCVRD RIVETYFPTL GLYFEPRFSL GRIIIAKMTI IVVALNDVCD 360
  361 SYATYPEAKS LIDSLQRWDI EAIDELPNYS RIVLRLILET IGEIEREMKP RGRSASVQHT 420
  421 IDETKSLGRA YLALSKWASE GYMPTFDEYM EVGEVTGGMD DFALYSFIAM EDCDEKPLYE 480
  481 WFDSKPKILQ ALSVLYRINN DIVTYEREMS KGEVVNGVNS YMNQHGVTKE EAVEELRKMA 540
  541 RDNYKIVMEE LLTITDVPRP VLVRCLNLAR LFDVFCKHGN DEFTYPHGNL KDLITSIFIH 600
  601 PIPV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle