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Protein Overview: gi|51971921, gi|...

General Information:
Name(s) found: gi|79314840 [NCBI NR]
gi|7669940 [NCBI NR]
gi|51971921 [NCBI NR]
gi|51970792 [NCBI NR]
gi|15231284 [NCBI NR]
gi|115646718 [NCBI NR]
gi|11358672 [NCBI NR]
Description(s) found:
Found 17 descriptions.
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  • gi|79314840|ref|NP_001030849.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15231284|ref|NP_190834.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana] [NCBI NR]
  • pir||T49019 probable RNA binding protein - Arabidopsis thaliana [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 471 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTRTAASE AHDSMESEER VDLDGDNDPE EILEEEVEYE EVEEEEIEEI EEEIEEEVEV  60
   61 EEEEEEEDAV ATEEEEEKKR HVELLALPPH GSEVYLGGIP TDATEGDLKG FCGSIGEVTE 120
  121 VRIMREKDSG DGKGYAFVTF RSKDLAAEAI DTLNNTDFRG KRIKCSTTQA KHRLFLGNVP 180
  181 RNWMESDIKK AANRIGPGVQ IVELPKEPQN MGRNRGFAFI EYYNHACAEY SKQKMSNPSF 240
  241 KLDDNAPTVS WAESRSGGGG DSSASQVKAL YIKNLPRDIT QERLKALFEH HGKILKVVIP 300
  301 PAKPGKEDSR YGFVHYAERT SVMRALKNTE RYEIDGHMLD CTLAKPQADQ KTNTNTVQNV 360
  361 QKSQLQPNYP PLLSYGMAPS PFGALGGFGA SAYSQPLMHA GGHAAGGMSM MPIMLPDGRI 420
  421 GYVLQQPGLA AMPQPPPRHS PPYRGGSGSS SSSGSKRSSD NGRGRSRYNP Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] PSI-BLAST 40.39794 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [85..361] PSI-BLAST 20.221849 No description for 2ghpA was found.
    3 View Details [362..471] MSA 7.430997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  4.33825636300428 bayes_pls_golite062009
  • binding
    		•  3.21467519876408 bayes_pls_golite062009
  • RNA binding
    		•  2.41328743949172 bayes_pls_golite062009
  • protein binding
    		•  2.17260848225967 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.58383432105811 bayes_pls_golite062009
  • mRNA binding
    		•  1.43710066986329 bayes_pls_golite062009
  • DNA binding
    		•  1.39336947685216 bayes_pls_golite062009
  • transcription factor activity
    		•  0.535968997434099 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.126508490547083 bayes_pls_golite062009
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  4.33825636300428 bayes_pls_golite062009
  • binding
    		•  3.21467519876408 bayes_pls_golite062009
  • RNA binding
    		•  2.41328743949172 bayes_pls_golite062009
  • protein binding
    		•  2.17260848225967 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.58383432105811 bayes_pls_golite062009
  • mRNA binding
    		•  1.43710066986329 bayes_pls_golite062009
  • DNA binding
    		•  1.39336947685216 bayes_pls_golite062009
  • transcription factor activity
    		•  0.535968997434099 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.126508490547083 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.58

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle