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Protein Overview: AT18F_ARATH

General Information:
Name(s) found: AT18F_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|15239726|ref|NP_200284.1| AtATG18f [Arabidopsis thaliana] [NCBI NR]
  • gi|10176800|dbj|BAB09939.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • Autophagy-related protein 18f OS=Arabidopsis thaliana GN=ATG18F PE=2 SV=1 [Swiss-Prot]
  • (Q9FH32) Similarity to unknown protein [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15239726|ref|NP_200284.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AtATG18f | AtATG18f (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) f) | chr5:22251203-22254030 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATATG18F, ATG18F, G18F | homolog of yeast autophagy 18 (ATG18) F | chr5:22233977-22236804 REVERSE LENGTH=763 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 763 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: response to starvation [IEP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNGDGSSP KSPDGVVSRS ARSSFRALSN CLKVISSGAS TVARSAVSAA SSAVESHHDQ  60
   61 VLWAGFDNLQ KEDGDTRRVL LLAFKSGFQV WDVEDTENVH VIVSAHDGQA FFMQMLLNPI 120
  121 NSGVLDDRFY KSRPLLAVCG DYSSKKISSD NPGSETVATP TNVYVYSLKS QSYVHTLKFR 180
  181 ATIYSVRCCS RIVAVLQAAQ IDCFDAATLE MDYRIVTNSI VCGSLGVGYG PLAVGPRWIA 240
  241 YSGSRIATSS SAIFTSEIVS LSTSSPSVAQ FARDSSKQLA SGIANLGDKG YRSLTKYCSE 300
  301 VLPNPYIPGL KGIGVGNEKV ADAESIGMVI VKDITNKSVI TQFKAHKSPI SALCFDQSGL 360
  361 LLVTASIQGH NINVFRIMPT ISTSRAVKTT TFAHLFRLQR GFTNAVIQDI CFSKDSNLIV 420
  421 VGSSRGTSHL FEINPEKEGD APVPMSAISR IRSGNSSGWI GTVSGAASAA AGMVAGSVPG 480
  481 TVTSTFCYCD EKSNNNYYGS VADMCSKTNL LVFAPSGCMT QYALREHQVG VGHETAAMTG 540
  541 FDSESGLETE GKLAVDPIRR WSMIQNQSRR ETHDPHSDIY GGGTSVDSKS KVFPEVVRKQ 600
  601 SVEEAWKVSK KGTTRVVDKR HLYIYEAEQQ QTHLPTQLPL WARRKFRFQE LVLNRGEEIS 660
  661 GGGGREMEIE GIQTRTIEAR TRDLVPVWGY LQSPRSQQVI NESIQSPSTT TQDDKVATLE 720
  721 GHGTETDLGA VHSEEQTQSE PVDKEGIAEE KNHSEDEDEE QVD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..479] PSI-BLAST 49.0 Actin interacting protein 1
    2 View Details [480..607] PSI-BLAST 3.522879 Crystal Structure of human dipeptidyl peptidase IV in complex with a decapeptide (tNPY) at 2.3 Ang. Resolution
    3 View Details [608..763] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.61

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle