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Protein Overview: gi|2924778, gi|1...

General Information:
Name(s) found: gi|2924778 [NCBI NR]
gi|25408248 [NCBI NR]
gi|15225803 [NCBI NR]
Description(s) found:
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  • gi|2924778|gb|AAC04907.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • pir||A84742 probable polygalacturonase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15225803|ref|NP_180874.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • (O49319) Putative polygalacturonase [athaliana3702.FASTAC.txt]
  • putative polygalacturonase [Arabidopsis thaliana]gi|25408248|pir||A84742 probable polygalacturonase [imported] - Arabidopsis thalianagi|15225803|ref|NP_180874.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr2:14060481-14063323 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr2:14053404-14056246 FORWARD LENGTH=664 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glycosyl hydrolase and polygalacturonase domain-containing protein OS=Arabidopsis thaliana GN=At2g33160 PE=3 SV=1 [ARATH-contam.fasta]
  • Glycoside hydrolase family 28 protein / polygalacturonase (Pectinase) family protein OS=Arabidopsis thaliana GN=At2g33160 PE=3 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 664 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: nucleic acid binding [IEA]
    polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRVLLILC VPSLFFFLAA STKEYPGQPK IFDVRNYGAR ADSQRDNAFA FTKAWNEACQ  60
   61 WSYGRSTVYI PSGIFYLRQV TFSGPCKSSI TFFIRGTLLA PRNPYAINQE EWILFKYVDN 120
  121 LTVTGGGLLD GQGSYSWPLN DCNKNTNCRT LAMNIGFAFV KSSKINGLRS INSKMGHFNL 180
  181 FSVEDFNITG VTITAPGDSP NTDGIKIGKS SHMQIYNVTI GTGDDCIAIL DGTSNLDISD 240
  241 VRCGPGHGIS VGSLGRYKEE KNVQGLTVRN SIINGTTDGL RIKTWAKSVS QISVSNFLYE 300
  301 NIQMINVGNP IVIDQQYCPH GQCDSPGKYA SHVQIKDVKY NNIWGTSTSK EALKMQCSKT 360
  361 FPCQDVELSN INLHYVGRDG LVTALCENVG GSIRGKIVPA NCRINLFLPS NIITDSNSTL 420
  421 EDKMQGIFQL ANTTQTQRFH QLPLWILWRL WNSRNILYFQ RRHVPWETTL QLAQMDLQEW 480
  481 NEAVTPSHIN SHGTTIRSHI PNWRRPTNGW VKCNVDGSFI NGNIPGKGGW IVRDHNGRYE 540
  541 FAGQAIGNCI DNALECEFQA LLMAMQHCWS KGYRRICFEG DNKEMFDLIN GLKMHFGAFN 600
  601 WIRDILWWAS KFEQTQFQWT NRQNNKPADI LARTPLQHQF LFANHFWVPR VISFALHCDY 660
  661 TSSI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..329] PSI-BLAST 36.0 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS
    2 View Details [330..402] FFAS03 1.11 Polygalacturonase
    3 View Details [403..506] deduced N/A No confident structure predictions are available.
    4 View Details [507..664] PSI-BLAST 14.39794 No description for 2ehgA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle