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Protein Overview: gi|15231878, gi|...

General Information:
Name(s) found: gi|6648196 [NCBI NR]
gi|15231878 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|6648196|gb|AAF21194.1|AC013483_18 putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|15231878|ref|NP_187441.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 401 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSYLGISAV LFVISLLGFS ANAEVFNVGG SPGSDITQAL LKAFTSACQA PTASKVVITK  60
   61 GEFKLGEIEM TGPCKAPVEI NLQGTLKADG KAIQGKERWV VFLRINGFKL NGGGIFDGEG 120
  121 NAAWRVNNCH KTFECKKLPI SIRFDFVENA EIRDISSIDA KNFHINVLGA KNMTFDNVKV 180
  181 IAPAESPNTD GIHLGRSEGV KILNSKIATG DDCISVGDGM KNLHVENVMC GPGHGISVGS 240
  241 LGRYVHEQDV TGITVVNCTL QGTDNGLRIK TWPSAACATT ASGIHFENII LNNVSNPILI 300
  301 DQEYCPWNQC NKQKPSTIKL VDISFKNIRG TSGNKDAVKL LCSKAHPCAN VEIGNINLEY 360
  361 KGADGPPTFM CSNVSPKLVG TQNPKACSAG PTPKTAAKGD L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..401] PSI-BLAST 41.221849 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle