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Protein Overview: gi|30688961, gi|...

General Information:
Name(s) found: gi|7486660 [NCBI NR]
gi|7270022 [NCBI NR]
gi|42573107 [NCBI NR]
gi|38564262 [NCBI NR]
gi|30688961 [NCBI NR]
gi|2827514 [NCBI NR]
gi|15235849 [NCBI NR]
gi|110739028 [NCBI NR]
Description(s) found:
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  • pir||T04487 hypothetical protein F8F16.10 - Arabidopsis thaliana [NCBI NR]
  • gi|7270022|emb|CAB79838.1| predicted protein [Arabidopsis thaliana] [NCBI NR]
  • gi|42573107|ref|NP_974650.1| SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|38564262|gb|AAR23710.1| At4g31200 [Arabidopsis thaliana] [NCBI NR]
  • gi|30688961|ref|NP_849479.1| SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|2827514|emb|CAA16523.1| predicted protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15235849|ref|NP_194848.1| SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110739028|dbj|BAF01433.1| predicted protein [Arabidopsis thaliana] [NCBI NR]
  • (O49570) PREDICTED protein [athaliana3702.FASTAC.txt]
  • At4g31200 [Arabidopsis thaliana]gi|7270022|emb|CAB79838.1| predicted protein [Arabidopsis thaliana]gi|2827514|emb|CAA16523.1| predicted protein [Arabidopsis thaliana]gi|7486660|pir||T04487 hypothetical protein F8F16.10 - Arabidopsis thalianagi|1523584 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein, related to DAN26 (Homo sapiens) gi:1770394:em [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | chr4:15162329-15164574 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • predicted protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At4g31200 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr4:15162323-15164568 REVERSE LENGTH=650 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At4g31200 OS=Arabidopsis thaliana GN=AT4g31200 PE=2 SV=1 [ARATH-contam.fasta]
  • At4g31200 OS=Arabidopsis thaliana GN=At4g31200 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 650 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRQHDYAA SSGLPYAQQQ QQQGPNFQQQ QQPQFGFHPQ HPQYPSPMNA SGFIPPHPSM  60
   61 QQFPYQHPMH QQQQPQHLPH PPHPQMFGQQ QPQAFLPHLP PHHLPPPFPG PYDSAPPPPP 120
  121 PADPELQKRI DKLVEYSVKN GPEFEAMMRD RQKDNPDYAF LFGGEGHGYY RYKHFLSMHP 180
  181 PGGPFDPPFP SSSMPMIHHP PNPMMSPSMN NVPGALAVPP IRQPPFPPFH DHHQLQQHLP 240
  241 QPHPFAPHAR PDFDQSTHAF RGLSGPLPAD VAMELNGVLG NLNGTKESIK SAKIWFMQRS 300
  301 PFAPALAEAL RDRVFAMDDS DRQMHIVYLA NDILFDSLQR RTNLHEFDNE ALAFRPILGS 360
  361 MLGRIYHFPQ NKEENQSRLE KILQFWASKE VFDQDTISSL EKEMKSGPPA NTFSHSPIIA 420
  421 AHALQRPGML QQPPNSNVSS TMNLEHLTNP VATQQFIPNV MPPGAFPGSI PLNASVPPPT 480
  481 QPPAGEKPPP YPLFPPGLIP GMVRKMQIGS GVPYSPLSPL DIPTVIPPSD TPQSEVLERV 540
  541 SKFFKEIGEV NPSEGPMGSE SQDDYDNYER DSPQRKGGAC IPPPPNLQVD PETGTYADGS 600
  601 TDKKSGSGRL GLGATADPNE PTQYDDVYTS YRKHRSTNYH TSMSARATTR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 4.522879 Sec24
    2 View Details [251..418] PSI-BLAST 23.30103 No description for 2diwA was found.
    3 View Details [419..650] MSA 4.067996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle