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Protein Overview: gi|15237927, gi|...

General Information:
Name(s) found: gi|15237927 [NCBI NR]
gi|10177065 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|15237927|ref|NP_197222.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10177065|dbj|BAB10507.1| polygalacturonase-like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSLFFVLL CLFQINKLCF CLEEESLKVK NGFGSNGFIS VTSFGAIGDG KTDDTKAFLK  60
   61 AWEAVCKGGH NRKILVPQGK TFMLKPLTFI GPCKSSTISL SIRGNLVAPG YTWYAGRYTT 120
  121 WISFDSINGL VVTGGGTIDG RGSLWWGNVN NRPCAMHFNN CNGLRISNLR HLNSPRNHVG 180
  181 LSCSQNIEVR GLRMTAPGDS PNTDGIDISN CIGVHIHDSV IATGDDCIAI NSGSSHINIT 240
  241 GIFCGPGHGI SVGSLGVTGD FETVEEVRVK NCTFTKTQNG VRIKTYQNGS GYARKISFED 300
  301 INMVASENPI IIDQTYHNGG TNGGISKSSS SYQNCHLTAK QRTPSGNGKG VKVTDVRYAR 360
  361 IRGSSASDQD ITLNCDADLG CSDIVMDNVN MVSATFGHKL FSSCKNAHGS LFASKVDCLK 420
  421 H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..421] PSI-BLAST 34.154902 Polygalacturonase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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