YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|9758171, gi|1...

General Information:
Name(s) found: gi|9758171 [NCBI NR]
gi|15240501 [NCBI NR]
Description(s) found:
Found 7 descriptions.
SHOW ALL
  • gi|9758171|dbj|BAB08556.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15240501|ref|NP_200350.1| EDM2; protein binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1332 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: signal transduction [IMP]
    vegetative to reproductive phase transition of meristem [IMP]
    defense response to fungus [IMP]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFVDDDEEE DFSVPQSASN YYFEDDDKEP VSFARLPIQW SVEEKVDGSG LGFYLRGRSD  60
   61 NGLLPLHKLV KAWRYDLSNF QPEISVLTKD NIWIKLEEPR KSYGELIRTV LVTLHSIQFL 120
  121 RRNPQASEKA LWEKLTRSLR SYDVKPSQND LVDHIGLIAE AAKRDRNLAN SKFILAFLTK 180
  181 KPTKRRLPDE DNAKDDFIVG DEDTYVASDE DELDDEDDDF FESVCAICDN GGEILCCEGS 240
  241 CLRSFHATKK DGEDSLCDSL GFNKMQVEAI QKYFCPNCEH KIHQCFICKN LGSSDNSSGA 300
  301 AEVFQCVSAT CGYFYHPHCV TRRLRLGNKE ESEALERQII AGEYTCPLHK CSVCENGEVK 360
  361 TDSNLQFAVC RRCPKSYHRK CLPREISFED IEDEDILTRA WDGLLHNRVL IYCQEHEIDE 420
  421 ELLTPVRDHV KFPFTEEQKV FVKEQRRILE SHVGRDKARL KVKDPALQDT CGKASKNSFR 480
  481 SSFPSSKDGF STKKHGLVSS VPDHSRKRKD IDPSIKHKMV PQKSQKMMED SREAGKNKLG 540
  541 VKEARDAGKS KISLGERLFS YTQEPNPVKP GRVIPVDSKH NKTDSIASKE PGSEIPTLDN 600
  601 DSQRRLLAVM KKATEEITMG TILKKFKIQS TMSTHSTRNV VDKTITMGKV EGSVQAIRTA 660
  661 LKKLEEGGNI EDAKAVCEPE VLSQILKWKD KLKVYLAPFL HGARYTSFGR HFTNPEKLQQ 720
  721 IVDRLHWYAD DGDMIVDFCC GSNDFSCLMN AKLEETGKKC LYKNYDLFPA KNNFNFERKD 780
  781 WMTVSKDELE PGSKLIMGLN PPFGVNASLA NKFITKALEF RPKILILIVP PETERFQFPS 840
  841 ISSAPLYHSI TLIYRLLSLS LVKSITFLNR LDKKKSSYVL IWEDKTFLSG NSFYLPGSVN 900
  901 EEDKQLEDWN LVPPPLSLWS RSDFAAKHKK IAEKHCHLSR DVGSSKLKIV EEEANASLHP 960
  961 LGASDGMCDD IPMEKDELEV AECVNKILVS EKIDTVETVA RVHQSDHLSR RSQLKKEGKT1020
 1021 KDYSGRKLGK SMDSNNVDWK SNDMEEDQGE LSRAPESIKV KIPEMTSDWQ SPVRSSPDDI1080
 1081 YAVCTSISTT TPQRSHEAVE ASLPAITRTK SNLGKNIREH GCKVQGTGKP EVSRDRPSSV1140
 1141 RTSREDIYTV RPSPENTGQK PFEAFEPSYG ASLSHFDDGL AAKYGGFGGG YRMPDPPFLP1200
 1201 DQFPLRNGPN EMFDFRGYSD LDRGIGQREY PQQYGGHLDP MLAPPPPPNL MDNAFPLQQR1260
 1261 YAPHFDQMNY QRMSSFPPQP PLQPSGHNLL NPHDFPLPPP PPSDFEMSPR GFAPGPNPNY1320
 1321 PYMSRSGGWI ND

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] PSI-BLAST 11.69897 No description for 2jrzA was found.
    2 View Details [150..485] PSI-BLAST 18.39794 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
    3 View Details [486..991] FFAS03 2.23 No description for 2okcA was found.
    4 View Details [992..1170] deduced N/A No confident structure predictions are available.
    5 View Details [1171..1332] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009
    3
    Term Confidence Notes
  • catalytic activity
    		•  0.639646908254091 bayes_pls_golite062009
  • transferase activity
    		•  0.394707018913607 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.0810339077201343 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.0737551340470768 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle