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Protein Overview: gi|25513500, gi|...

General Information:
Name(s) found: gi|5734747 [NCBI NR]
gi|25513500 [NCBI NR]
gi|15220054 [NCBI NR]
gi|110738070 [NCBI NR]
Description(s) found:
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  • gi|5734747|gb|AAD50012.1|AC007651_7 Hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C86308 F20D23.9 protein - Arabidopsis thaliana [NCBI NR]
  • gi|15220054|ref|NP_173164.1| zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|110738070|dbj|BAF00969.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9SHI0) F20D23.9 protein [athaliana3702.FASTAC.txt]
  • Hypothetical protein [Arabidopsis thaliana]gi|25513500|pir||C86308 F20D23.9 protein - Arabidopsis thalianagi|15220054|ref|NP_173164.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein, distantly related to dentin phosphoryn (Homo sapiens) (G [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc ion binding | chr1:5880495-5884650 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATILP1, ILP1 | IAP-like protein 1 | chr1:5880502-5884657 REVERSE LENGTH=958 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F20D23.9 protein OS=Arabidopsis thaliana GN=F20D23.9 PE=2 SV=1 [ARATH-contam.fasta]
  • F20D23.9 protein OS=Arabidopsis thaliana GN=F20D23.9 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 958 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytosol [IDA]
    phragmoplast [IDA]
    Biological Process: NONE FOUND
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEEDVSSQN VNPRSNRNSV ASASASASAT PVDRFRRRAR SPSPPQTAAA SSAGASSPAV  60
   61 LVNAGSVDWT GHGLALSVRS CRTWDRGDLL RRLATFKPSN WLGKPKTASS LACAQKGWVS 120
  121 VDLDKLQCEY CGSILQYSPP QDSLNPPEAD TTGEKFSKQL DDAHESSCPW VGKSCSESLV 180
  181 QFPPTPPSAL IGGYKDRCDG LLQFYSLPIV SPSAIDQMRA SRRPQIDRLL AHANDDLSFR 240
  241 MDNISAAETY KEEAFSNYSR AQKLISLCGW EPRWLPNIQD CEEHSAQSAR NGCPSGPARN 300
  301 QSRLQDPGPS RKQFSASSRK ASGNYEVLGP EYKSESRLPL LDCSLCGVTV RICDFMTTSR 360
  361 PVPFAAINAN LPETSKKMGV TRGTSATSGI NGWFANEGMG QQQNEDVDEA ETSVKRRLVS 420
  421 NVGLSFYQNA AGASSSAQLN MSVTRDNYQF SDRGKEVLWR QPSGSEVGDR AASYESRGPS 480
  481 TRKRSLDDGG STVDRPYLRI QRADSVEGTV VDRDGDEVND DSAGPSKRTR GSDAHEAYPF 540
  541 LYGRDLSVGG PSHSLDAENE REVNRSDPFS EGNEQVMAFP GARDSTRASS VIAMDTICHS 600
  601 ANDDSMESVE NHPGDFDDIN YPSVATAQSA DFNDPSELNF SNQAQQSACF QPAPVRFNAE 660
  661 QGISSINDGE EVLNTETVTA QGRDGPSLGV SGGSVGMGAS HEAEIHGADV SVHRGDSVVG 720
  721 DMEPVAEVIE NLGQSGEFAP DQGLTDDFVP AEMDREGRLG DSQDRVSQSV VRADSGSKIV 780
  781 DSLKAESVES GEKMSNINVL INDDSVHPSL SCNAIVCSGY EASKEEVTQT WESPLNAGFA 840
  841 LPGSSYTAND QGPQNGDSND DIVEFDPIKY HNCYCPWVNE NVAAAGCSSN SSGSSGFAEA 900
  901 VCGWQLTLDA LDSFQSLENP QNQTMESESA ASLCKDDHRT PSQKLLKRHS FISSHGKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] deduced N/A No confident structure predictions are available.
    2 View Details [74..291] Pfam 62.154902 No description for PF07967.5 was found. No confident structure predictions are available.
    3 View Details [292..401] deduced N/A No confident structure predictions are available.
    4 View Details [402..554] deduced N/A No confident structure predictions are available.
    5 View Details [555..693] deduced N/A No confident structure predictions are available.
    6 View Details [694..786] deduced N/A No confident structure predictions are available.
    7 View Details [787..958] MSA 1.004936 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle