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View Structure Prediction Details

Protein: gi|25513500, gi|...
Organism: Arabidopsis thaliana
Length: 958 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25513500, gi|....

Description E-value Query
Range
Subject
Range
gi|108711429 - gi|108711429|gb|ABF99224.1| expressed protein [Oryza sativa (japonica cultivar-group)]
1140.0 [0..35] [957..1]
gi|79361705 - gi|79361705|ref|NP_175325.2| zinc ion binding [Arabidopsis thaliana]
287.0 [0..20] [569..18]
gi|187469606, gi... - gi|187937036|ref|NP_001120765.1| zinc finger, C3HC-type containing 1 [Rattus norvegicus], gi|1874696...
255.0 [0..19] [294..1]
gi|73975777 - gi|73975777|ref|XP_532428.2| PREDICTED: similar to zinc finger, C3HC type 1 [Canis familiaris]
252.0 [0..14] [390..83]
gi|77736129, gi|... - gi|77736129|ref|NP_001029763.1| zinc finger, C3HC type 1 [Bos taurus], gi|74354310|gb|AAI02860.1| Zi...
245.0 [0..19] [332..1]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEEDVSSQN VNPRSNRNSV ASASASASAT PVDRFRRRAR SPSPPQTAAA SSAGASSPAV  60
   61 LVNAGSVDWT GHG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [74-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LALSVRSCRT WDRGDLLRRL ATFKPSNWLG KPKTASSLAC AQKGWVSVDL DKLQCEYCGS  60
   61 ILQYSPPQDS LNPPEADTTG EKFSKQLDDA HESSCPWVGK SCSESLVQFP PTPPSALIGG 120
  121 YKDRCDGLLQ FYSLPIVSPS AIDQMRASRR PQIDRLLAHA NDDLSFRMDN ISAAETYKEE 180
  181 AFSNYSRAQK LISLCGWEPR WLPNIQDCEE HSAQSARN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 62.154902
Match: PF07967.5
Description: No description for PF07967.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [292-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCPSGPARNQ SRLQDPGPSR KQFSASSRKA SGNYEVLGPE YKSESRLPLL DCSLCGVTVR  60
   61 ICDFMTTSRP VPFAAINANL PETSKKMGVT RGTSATSGIN GWFANEGMGQ 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [402-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQNEDVDEAE TSVKRRLVSN VGLSFYQNAA GASSSAQLNM SVTRDNYQFS DRGKEVLWRQ  60
   61 PSGSEVGDRA ASYESRGPST RKRSLDDGGS TVDRPYLRIQ RADSVEGTVV DRDGDEVNDD 120
  121 SAGPSKRTRG SDAHEAYPFL YGRDLSVGGP SHS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [555-693]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDAENEREVN RSDPFSEGNE QVMAFPGARD STRASSVIAM DTICHSANDD SMESVENHPG  60
   61 DFDDINYPSV ATAQSADFND PSELNFSNQA QQSACFQPAP VRFNAEQGIS SINDGEEVLN 120
  121 TETVTAQGRD GPSLGVSGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [694-786]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVGMGASHEA EIHGADVSVH RGDSVVGDME PVAEVIENLG QSGEFAPDQG LTDDFVPAEM  60
   61 DREGRLGDSQ DRVSQSVVRA DSGSKIVDSL KAE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [787-958]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVESGEKMSN INVLINDDSV HPSLSCNAIV CSGYEASKEE VTQTWESPLN AGFALPGSSY  60
   61 TANDQGPQNG DSNDDIVEFD PIKYHNCYCP WVNENVAAAG CSSNSSGSSG FAEAVCGWQL 120
  121 TLDALDSFQS LENPQNQTME SESAASLCKD DHRTPSQKLL KRHSFISSHG KK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle